CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g07135

Gene name glycine-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At1g07135 837224 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA S.X. H.G.
0.40 50.8 At1g69890 843325 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.40 50.8 At2g39650 818548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.22 17.5 At3g57530 824920 CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro S.X. H.G.
0.20 14.4 At4g31550 829282 WRKY11 member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
101.8 99.9 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
91.6 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
82.4 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
73.0 99.9 GSM39198 RRE1_Chitin4 GSE2169 rre1 and rre2 mutants
71.5 99.9 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
71.5 99.9 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
62.8 99.8 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
62.6 99.8 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
58.5 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
58.4 99.8 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 4e-3 42 At5g13910 831238 LEP (LEAFY PETIOLE) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination. C.G. S.X.
0.02 4e-3 42 At4g01985 2745601 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.03 4e-3 42 At3g20890 821638 RNA binding / nucleic acid binding / nucleotide binding F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPBOFVA C.G. S.X.
0.02 1e-2 40 At3g54220 824589 SCR (SCARECROW) Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. SCR appears to be a direct target of SHR. C.G. S.X.
0.02 1e-2 40 At3g11402 820312 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.04 1e-2 40 At1g27390 839629 TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins C.G. S.X.
0.01 1e-2 40 At1g08520 837374 CHLD F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA C.G. S.X.
0.07 1e-2 40 At1g54215 841862 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA C.G. S.X.
0.02 6e-2 38 At3g06410 819815 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;OMPFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-2 38 Glycine max HgAffx.3682.1.A1_at CK349008 - - 5e-2 At1g07135 glycine-rich protein C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig20626_at Contig20626 - - 4e+0 At5g58240 bis(5'-adenosyl)-triphosphatase, putative C.G. S.X.
0.06 5e-4 46 Oryza sativa OsAffx.14165.1.S1_at - - - 0 C.G. S.X.
0.06 8e-5 48 Populus trichocarpa PtpAffx.221669.1.S1_s_at pmrna38669 hypothetical protein - 2e+0 At3g27831 - C.G. S.X.
0.06 4e-3 42 Triticum aestivum TaAffx.54566.1.S1_s_at CA679969 - - 8e-1 At2g27030 CAM5 (CALMODULIN 5) C.G. S.X.
0.05 7e-2 36 Vitis vinifera 1618771_s_at CD715283 hypothetical protein LOC100262843 - 3e-4 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
0.05 1e-1 36 Zea mays Zm.15540.1.S1_at CD219351 hypothetical protein LOC100277347 - 1e-2 At1g27390 TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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