CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g07000

Gene name ATEXO70B2 (exocyst subunit EXO70 family protein B2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.75 86.9 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.75 86.9 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO S.X. H.G.
0.53 68.6 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway S.X. H.G.
0.50 65.3 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.3 99.9 E-MEXP-1443-raw-cel-1581869863
70.1 99.9 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
57.0 99.8 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
53.2 99.8 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
38.8 99.8 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
38.7 99.8 GSM128719 Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
37.8 99.8 E-MEXP-807-raw-cel-1173273170
37.6 99.7 GSM128660 Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
36.9 99.7 E-NASC-76-raw-cel-1359879132
35.2 99.7 E-MEXP-807-raw-cel-1173273116
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 3e-19 97 At5g58430 835956 ATEXO70B1 (exocyst subunit EXO70 family protein B1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.01 2e-1 38 At5g48030 834854 GFA2 (GAMETOPHYTIC FACTOR 2) encodes a mitochondrially targeted DNAJ protein involved in female gametophyte development. C.G. S.X.
0.02 9e-1 36 At5g18080 830267 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO C.G. S.X.
0.01 9e-1 36 At5g41120 834114 esterase/lipase/thioesterase family protein F:catalytic activity, acyltransferase activity;P:metabolic process;C:cellular_component unknown;BPMO C.G. S.X.
0.01 9e-1 36 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA C.G. S.X.
0.01 9e-1 36 At2g17690 816276 SDC (SUPPRESSOR OF DRM1 DRM2 CMT3) Encodes an F-box domain containing protein that is regulated by non-CG DNA methylation. In drm1 drm2 cmt3 triple mutant background SDC expression is no longer suppressed and plants display abnormal development including curled leaves and reduced stature. C.G. S.X.
0.02 9e-1 36 At1g05385 837040 photosystem II 11 kDa protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP C.G. S.X.
0.01 9e-1 36 At1g01800 839259 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:plant-type cell wall;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.41990.1.S1_at CA936708 - - 1e+0 At1g30140 unknown protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig17873_at Contig17873 - - 4e-1 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.5925.1.S1_at - - - 0 C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.108587.1.A1_at CV234168 - - 3e-1 At4g21560 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) C.G. S.X.
0.02 9e-1 36 Triticum aestivum TaAffx.25962.1.S1_at CA693780 - - 2e-2 At4g10910 unknown protein C.G. S.X.
0.04 5e-6 52 Vitis vinifera 1620717_at BQ799683 hypothetical protein LOC100255378 - 3e-15 At5g58430 ATEXO70B1 (exocyst subunit EXO70 family protein B1) C.G. S.X.
0.02 4e-1 36 Zea mays Zm.5567.1.A1_at BE552517 Histone H2B.2 - 6e-1 At1g07000 ATEXO70B2 (exocyst subunit EXO70 family protein B2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006904 The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis.
L GO:0006887 A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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