CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g06980

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g06980 837208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.46 59.8 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.44 57.2 At4g23870 828486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.36 43.6 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
88.7 99.9 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
75.3 99.9 GSM131181 AtGen_D-13_1-BS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
66.8 99.8 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
61.4 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.0 99.8 GSM131196 AtGen_D-30_2-AS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
58.4 99.8 GSM131178 AtGen_D-10_1-FS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
57.4 99.8 GSM131182 AtGen_D-14_1-AS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
56.6 99.8 GSM131198 AtGen_D-32_2-WS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
55.0 99.8 GSM131184 AtGen_D-16_1-WS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
52.9 99.8 GSM131195 AtGen_D-29_2-BS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 5e-58 224 At2g30230 817573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e-1 36 At3g25970 822194 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.02 1e+0 34 At5g67480 836884 BT4 (BTB AND TAZ DOMAIN PROTEIN 4) BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves. C.G. S.X.
0.01 1e+0 34 At5g48960 834954 5' nucleotidase family protein F:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;MPBO C.G. S.X.
0.01 1e+0 34 At4g10930 826692 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOFBP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Glycine max HgAffx.13358.1.S1_at CB379461 - - 4e-1 At1g06980 unknown protein C.G. S.X.
0.04 5e-1 34 Hordeum vulgare Contig21644_at Contig21644 - - 8e-1 At1g06980 unknown protein C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.9191.1.S1_at - - - 0 C.G. S.X.
0.26 3e-20 99 Populus trichocarpa PtpAffx.53926.1.S1_at CV275233 hypothetical protein - 3e-20 At1g06980 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.79341.1.S1_at CA717896 - - 2e-1 At2g39320 OTU-like cysteine protease family protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1621436_at CK138130.1 - - 5e+0 At4g22600 unknown protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.1177.2.A1_at AW520081 - - 3e-42 At3g53230 cell division cycle protein 48, putative / CDC48, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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