CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g06620

Gene name 2-oxoglutarate-dependent dioxygenase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g06620 837171 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase S.X. H.G.
0.70 83.5 At1g20310 838619 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.68 82.2 At2g14290 815916 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.68 82.2 At5g56980 835800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.65 79.6 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.62 77.3 At1g30135 839893 JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.59 74.7 At5g12340 831109 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.59 74.7 At2g34600 818025 JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7) F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;P S.X. H.G.
0.59 74.7 At4g37770 829933 ACS8 Encodes an auxin inducible ACC synthase. S.X. H.G.
0.58 73.8 At5g61900 836311 BON1 (BONZAI 1) Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
345.2 100.0 E-MEXP-807-raw-cel-1173273170
324.7 100.0 E-MEXP-807-raw-cel-1173273116
237.2 100.0 E-MEXP-807-raw-cel-1173273060
221.7 100.0 E-MEXP-807-raw-cel-1173273223
173.6 100.0 E-MEXP-807-raw-cel-1173273196
171.3 100.0 E-MEXP-807-raw-cel-1173273088
112.2 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
106.7 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
66.1 99.8 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
65.0 99.8 E-MEXP-807-raw-cel-1173273252
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 5e-38 159 At3g61400 825312 2-oxoglutarate-dependent dioxygenase, putative 1-aminocyclopropane-1-carboxylate oxidase-like protein C.G. S.X.
0.44 5e-38 159 At1g03410 838763 2A6 F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFM C.G. S.X.
0.22 2e-37 157 At5g43450 834365 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase C.G. S.X.
0.41 3e-36 153 At1g03400 838751 2-oxoglutarate-dependent dioxygenase, putative A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers. C.G. S.X.
0.25 2e-25 117 At2g30830 817634 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase C.G. S.X.
0.27 2e-22 107 At5g59540 836073 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.23 3e-21 103 At2g30840 817635 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase C.G. S.X.
0.21 1e-20 101 At1g06650 837175 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-9 63 Glycine max GmaAffx.75577.1.S1_at AW279266 - - 1e-9 At1g06620 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.03 1e+0 34 Hordeum vulgare EBpi03_SQ003_B07_at EBpi03_SQ003_B07 - - 2e-1 At1g53160 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) C.G. S.X.
0.02 2e-2 42 Oryza sativa Os03g0856000 AK071626.1 - 2OG-Fe(II) oxygenase domain containing protein 8e-7 At1g06650 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.11 1e-8 61 Populus trichocarpa PtpAffx.208719.1.S1_at pmrna17289 hypothetical protein - 9e-9 At1g06620 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.03 6e-1 36 Triticum aestivum Ta.12050.1.A1_at BQ171485 - - 1e-3 At1g04350 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.06 4e-8 57 Vitis vinifera 1622347_at CD721503 - - 9e-8 At1g06620 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.02 9e-1 34 Zea mays Zm.6025.1.A1_at AI665242 - - 3e+0 At4g02830 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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