CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g06520

Gene name GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g06520 837163 GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1) Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. S.X. H.G.
0.96 97.3 At5g19880 832110 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to ethylene stimulus, response to oxidative stress, response to virus, N-terminal protein myristoylation;C:endomembrane system;PFOM S.X. H.G.
0.92 96.0 At1g65445 842856 transferase-related F:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.87 93.5 At1g65450 842857 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.86 93.1 At1g25330 839117 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF S.X. H.G.
0.80 89.8 At1g30795 839961 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOV S.X. H.G.
0.80 89.8 At5g23960 832461 TPS21 (TERPENE SYNTHASE 21) Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma. S.X. H.G.
0.78 88.6 At3g12000 820374 S-locus related protein SLR1, putative (S1) F:sugar binding;P:recognition of pollen;C:endomembrane system;PO S.X. H.G.
0.69 82.9 At3g26140 822214 glycosyl hydrolase family 5 protein / cellulase family protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BFPOA S.X. H.G.
0.48 62.5 At2g17000 816203 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1007.6 100.0 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
888.6 100.0 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
124.4 99.9 GSM67084 Arabidopsis_Stigma01 GSE3056 Arabidopsis Pollination Study
106.9 99.9 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
94.7 99.9 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
87.4 99.9 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
78.8 99.9 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
78.2 99.9 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
72.2 99.9 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
59.1 99.8 GSM131598 ATGE_39_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 1e-9 65 At4g01950 827165 GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3) Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. C.G. S.X.
0.03 2e-8 61 At3g11430 820316 GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5) Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester. C.G. S.X.
0.05 4e-6 54 At1g02390 839558 GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2) Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. C.G. S.X.
0.02 2e-4 48 At4g00400 828140 GPAT8 (glycerol-3-phosphate acyltransferase 8) Involved in cutin assembly. Is functional redundant of GPAT4. C.G. S.X.
0.03 4e-3 44 At1g01610 839297 GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4) Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8. C.G. S.X.
0.02 6e-2 40 At4g21450 826300 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV C.G. S.X.
0.01 9e-1 36 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO C.G. S.X.
0.01 9e-1 36 At3g25160 822107 ER lumen protein retaining receptor family protein F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-2 42 Glycine max Gma.14009.1.A1_at CD417526 - - 7e-2 At1g02390 GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2) C.G. S.X.
0.02 4e-1 36 Hordeum vulgare HU08K05u_at HU08K05u - - 4e+0 At5g24510 60s acidic ribosomal protein P1, putative C.G. S.X.
0.02 4e-1 38 Oryza sativa Os08g0131300 9636.m00288 - - 7e-1 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) C.G. S.X.
0.12 5e-9 63 Populus trichocarpa PtpAffx.202394.1.S1_at pmrna4807 hypothetical protein - 3e-9 At1g06520 GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1) C.G. S.X.
0.02 9e-1 36 Triticum aestivum Ta.622.3.S1_at CA692932 AML15 - 7e-1 At4g18120 AML3 (ARABIDOPSIS MEI2-LIKE 3) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1614919_at CF515942 - - 1e+0 At4g12970 unknown protein C.G. S.X.
0.02 2e+0 34 Zea mays Zm.5066.2.A1_a_at CB351032 hypothetical protein LOC100272872 - 1e+0 At3g08980 signal peptidase I family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048235 The process whereby a relatively unspecialized cell acquires specialized features of a haploid sperm cell within the plant gametophyte.
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00427 Glycerolipid biosynthesis in mitochondria

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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