CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g06250

Gene name lipase class 3 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.68 82.2 At1g06250 837135 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMV S.X. H.G.
0.96 97.3 At5g07520 830645 GRP18 (GLYCINE-RICH PROTEIN 18) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12). S.X. H.G.
0.96 97.3 At5g07540 830647 GRP16 (GLYCINE-RICH PROTEIN 16) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12). S.X. H.G.
0.92 96.0 At5g61605 836282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.92 96.0 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO S.X. H.G.
0.89 94.6 At5g07530 830646 GRP17 (GLYCINE RICH PROTEIN 17) encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat. S.X. H.G.
0.87 93.5 At1g30350 839915 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.87 93.5 At3g52810 824447 PAP21 (PURPLE ACID PHOSPHATASE 21) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFA S.X. H.G.
0.87 93.5 At1g23590 838969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.85 92.4 At1g28430 839741 CYP705A24 member of CYP705A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
156.6 99.9 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
122.9 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
94.9 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
90.8 99.9 GSM106934 opr3_OPDA_8 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
87.5 99.9 GSM106908 opr3_JA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
82.2 99.9 GSM106919 opr3_OPDA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
80.4 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.2 99.9 GSM106921 opr3_OPDA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
77.4 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.6 99.9 GSM106827 opr3_0 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 5e-23 109 At2g31100 817666 triacylglycerol lipase F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFBOM C.G. S.X.
0.03 1e-2 42 At5g63740 836494 zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA C.G. S.X.
0.02 1e-2 42 At3g01080 821213 WRKY58 member of WRKY Transcription Factor; Group I C.G. S.X.
0.01 1e-2 42 At2g35670 818136 FIS2 (FERTILIZATION INDEPENDENT SEED 2) Encodes a negative regulator of seed development in the absence of pollination. In the ovule, the FIS2 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. C.G. S.X.
0.02 4e-2 40 At3g43590 823456 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:unknown;C:unknown;VMOFPB C.G. S.X.
0.01 4e-2 40 At2g31690 817725 lipase class 3 family protein encodes a triacylglycerol lipase located in plastoglobuli and involved in the degradation of triacylglycerol. It also has impact on leaf senescence and maintaining the structural integrity of thylakoids. C.G. S.X.
0.02 4e-2 40 At1g60220 842317 ULP1D (UB-LIKE PROTEASE 1D) Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP:OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S:OTS1 increases salt tolerance and reduces the level of SUMO-conjugated proteins. OTS1 transcript levels do not appear to change in response to salt, but, salt stress reduces the level of OTS1 protein in a proteasome-dependent manner. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max Gma.11635.1.S1_at BE023380 - - 3e+0 At2g42550 protein kinase family protein C.G. S.X.
0.03 8e-2 38 Hordeum vulgare HVSMEl0003G02r2_at HVSMEl0003G02r2 - - 1e-3 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.02 1e+0 36 Oryza sativa Os07g0655800 AU182660 - Conserved hypothetical protein 3e+0 At3g30160 unknown protein C.G. S.X.
0.03 1e-2 42 Populus trichocarpa PtpAffx.213659.1.S1_at pmrna26673 hypothetical protein - 7e-3 At5g63740 zinc finger protein-related C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.9393.1.A1_at BJ273243 - - 2e+1 At2g29525 - C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1617373_s_at CA816697 hypothetical protein LOC100245878 - 5e-6 At5g23570 SGS3 (SUPPRESSOR OF GENE SILENCING 3) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.8971.1.A1_at BM072888 - - 2e+0 At5g60430 antiporter/ drug transporter C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00043 Triacylglycerol metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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