CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g06170

Gene name basic helix-loop-helix (bHLH) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.79 89.1 At1g06170 837126 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO S.X. H.G.
0.94 96.7 At1g01280 839470 CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2) member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis). S.X. H.G.
0.94 96.7 At2g42940 818895 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
0.94 96.7 At4g29980 829121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.94 96.7 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.94 96.7 At4g35420 829695 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAV S.X. H.G.
0.93 96.4 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
0.93 96.4 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF S.X. H.G.
0.93 96.4 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
0.93 96.4 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
233.7 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
190.7 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
190.3 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
189.3 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
186.4 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
183.8 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
180.1 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
171.0 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
168.2 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
163.9 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 3e-40 167 At2g31220 817679 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO C.G. S.X.
0.12 3e-18 93 At2g31210 817677 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFVA C.G. S.X.
0.08 1e-5 52 At2g31215 817678 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P C.G. S.X.
0.01 4e-2 40 At5g15580 831411 LNG1 (LONGIFOLIA1) Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function. C.G. S.X.
0.02 6e-1 36 At5g14440 831295 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 6e-1 36 At5g38640 833854 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPV C.G. S.X.
0.02 6e-1 36 At3g11020 820273 DREB2B (DRE/CRT-BINDING PROTEIN 2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max GmaAffx.53244.1.S1_at BM188127 - - 4e+0 At4g29930 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HV02A24u_at HV02A24u - - 3e+0 At3g62840 - C.G. S.X.
0.02 5e+0 34 Oryza sativa OsAffx.11929.1.S1_at - - - 0 C.G. S.X.
0.08 4e-9 63 Populus trichocarpa PtpAffx.213391.1.S1_at pmrna26199 hypothetical protein - 1e-17 At2g31210 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 4e-2 40 Triticum aestivum Ta.7545.1.A1_a_at BJ238285 - - 4e+0 At2g35080 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1614076_at CB346355 hypothetical protein LOC100254333 - 2e-1 At2g30560 glycine-rich protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.5789.13.A1_a_at AI670670 hypothetical protein LOC100192516 - 8e-7 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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