Gene omics information

Query gene ID At1g06110
Gene name SKIP16 (SKP1/ASK-interacting protein 16)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g06110837120SKIP16 (SKP1/ASK-interacting protein 16)F:protein binding;P:biological_process unknown;C:SCF ubiquitin ligase complex;BOMPFS.X.H.G.
0.5773.8At3g03330821281short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, plasma membrane;BOMFPAVS.X.H.G.
0.3338.1At4g15475827219F-box family protein (FBL4)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBVS.X.H.G.
0.2930.3At5g63200836441tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFPS.X.H.G.
0.082.3At2g21240816663BPC4 (BASIC PENTACYSTEINE 4)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
116.899.9GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
70.699.9GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
45.199.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
36.799.7GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.099.4GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seeds
11.899.3GSM128650Underwood_1-3_Cor-10e6-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.799.3GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
10.899.2GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.699.1GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
8.299.0GSM142628MC002_ATH1_A2.3-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At5g18860832004inosine-uridine preferring nucleoside hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFAC.G.S.X.
0.016e-136At4g24860828589AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAVC.G.S.X.
0.013e+034At5g62370836358pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
0.013e+034At5g57700835877BNR/Asp-box repeat family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAC.G.S.X.
0.013e+034At4g33970829543protein binding / structural constituent of cell wallF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAC.G.S.X.
0.013e+034At4g03370827951ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:unknown;MPOFVBC.G.S.X.
0.013e+034At3g56310824798alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putativeF:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process, metabolic process, lactose catabolic process;C:vacuole;MBFOPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGmaAffx.93441.1.S1_atCF809166--1e+0At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)C.G.S.X.
0.041e+034Hordeum vulgareContig11116_atContig11116--9e-1At3g12150unknown proteinC.G.S.X.
0.039e-550Oryza sativaOs11g0265200CB655117-Protein of unknown function DUF525 family protein6e-5At1g06110SKIP16 (SKP1/ASK-interacting protein 16)C.G.S.X.
0.082e-138Populus trichocarpaPtpAffx.85534.1.S1_atCV228431hypothetical protein-2e-1At1g06110SKIP16 (SKP1/ASK-interacting protein 16)C.G.S.X.
0.032e-138Triticum aestivumTaAffx.113831.1.S1_atCA604215--8e-1At5g04470SIM (SIAMESE)C.G.S.X.
0.062e-446Vitis vinifera1620897_atCF603365similar to F-box-containing protein 2-3e-4At1g06110SKIP16 (SKP1/ASK-interacting protein 16)C.G.S.X.
0.022e+130Zea maysZmAffx.1112.1.A1_s_atAW231401--7e-13Atcg00040-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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