CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g05910

Gene name cell division cycle protein 48-related / CDC48-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.97 97.6 At1g05910 837101 cell division cycle protein 48-related / CDC48-related F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BMOFPAV S.X. H.G.
0.50 65.3 At4g15880 827269 ESD4 (EARLY IN SHORT DAYS 4) EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development. S.X. H.G.
0.44 57.2 At1g26370 839179 RNA helicase, putative F:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPA S.X. H.G.
0.40 50.8 At5g63110 836431 HDA6 (HISTONE DEACETYLASE 6) RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. S.X. H.G.
0.36 43.6 At1g26170 839158 binding / protein transporter F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPO S.X. H.G.
0.35 41.6 At1g55150 841958 DEAD box RNA helicase, putative (RH20) F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.32 35.7 At3g61240 825296 DEAD/DEAH box helicase, putative (RH12) F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:unknown;OBMFPAV S.X. H.G.
0.31 33.8 At4g30890 829213 UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) Encodes a ubiquitin-specific protease. S.X. H.G.
0.30 32.1 At5g01290 831240 mRNA guanylyltransferase/ phosphatase/ polynucleotide 5'-phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity;P:protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation;C:nucleus;MOFVP S.X. H.G.
0.29 30.3 At1g61010 842393 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.2 99.6 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
22.8 99.6 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.4 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.7 99.6 E-ATMX-35-raw-cel-1574334832
18.9 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.1 99.5 E-ATMX-35-raw-cel-1574334816
17.0 99.5 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.7 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.5 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.3 99.4 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-3 44 At3g15120 820743 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 5e-1 38 At3g15605 820802 - F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-1 38 At3g16320 820879 CDC27a Subunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic progression and cell differentiation during the entire life cycle. C.G. S.X.
0.01 5e-1 38 At2g01210 814649 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast stroma, chloroplast, plasma membrane, plant-type cell wall;PMOBFVA C.G. S.X.
0.01 2e+0 36 At5g05260 830408 CYP79A2 (CYTOCHROME P450 79A2) Encodes cytochrome P450 CYP79A2. C.G. S.X.
0.01 2e+0 36 At4g29650 829086 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO C.G. S.X.
0.01 2e+0 36 At4g16730 827376 lyase/ magnesium ion binding F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-58 228 Glycine max GmaAffx.77691.1.S1_at BI786135 - - 3e-59 At1g05910 cell division cycle protein 48-related / CDC48-related C.G. S.X.
0.02 2e-1 38 Hordeum vulgare Contig16263_at Contig16263 - - 1e+0 At2g22310 ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) C.G. S.X.
0.17 2e-69 266 Oryza sativa Os09g0515100 AK110315.1 - Bromodomain containing protein 7e-62 At1g05910 cell division cycle protein 48-related / CDC48-related C.G. S.X.
0.11 2e-34 149 Populus trichocarpa PtpAffx.222257.1.S1_s_at pmrna39549 bromodomain protein /// hypothetical protein /// bromodomain protein /// bromodomain protein - 4e-35 At1g05910 cell division cycle protein 48-related / CDC48-related C.G. S.X.
0.10 6e-19 97 Triticum aestivum Ta.23800.2.S1_at BJ207557 - - 2e-16 At1g05910 cell division cycle protein 48-related / CDC48-related C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1612034_at CF207955 hypothetical protein LOC100265881 - 5e-1 At5g62290 nucleotide-sensitive chloride conductance regulator (ICln) family protein C.G. S.X.
0.20 7e-66 252 Zea mays Zm.12719.1.S1_at AF545811.1 bromodomain protein 103 - 1e-57 At1g05910 cell division cycle protein 48-related / CDC48-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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