Gene omics information

Query gene ID At1g05910
Gene name cell division cycle protein 48-related / CDC48-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9797.6At1g05910837101cell division cycle protein 48-related / CDC48-relatedF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BMOFPAVS.X.H.G.
0.5065.3At4g15880827269ESD4 (EARLY IN SHORT DAYS 4)EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.S.X.H.G.
0.4457.2At1g26370839179RNA helicase, putativeF:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPAS.X.H.G.
0.4050.8At5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.S.X.H.G.
0.3643.6At1g26170839158binding / protein transporterF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOS.X.H.G.
0.3541.6At1g55150841958DEAD box RNA helicase, putative (RH20)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.3235.7At3g61240825296DEAD/DEAH box helicase, putative (RH12)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:unknown;OBMFPAVS.X.H.G.
0.3133.8At4g30890829213UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)Encodes a ubiquitin-specific protease.S.X.H.G.
0.3032.1At5g01290831240mRNA guanylyltransferase/ phosphatase/ polynucleotide 5'-phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphataseF:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity;P:protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation;C:nucleus;MOFVPS.X.H.G.
0.2930.3At1g61010842393CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPVS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.299.6GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
22.899.6GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.499.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.799.6E-ATMX-35-raw-cel-1574334832
18.999.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.199.5E-ATMX-35-raw-cel-1574334816
17.099.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.799.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.599.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.399.4GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-344At3g15120820743AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAVC.G.S.X.
0.015e-138At3g15605820802-F:unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.015e-138At3g16320820879CDC27aSubunit in the anaphase-promoting complex. Role in gametogenesis, control of mitotic progression and cell differentiation during the entire life cycle.C.G.S.X.
0.015e-138At2g01210814649leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast stroma, chloroplast, plasma membrane, plant-type cell wall;PMOBFVAC.G.S.X.
0.012e+036At5g05260830408CYP79A2 (CYTOCHROME P450 79A2)Encodes cytochrome P450 CYP79A2.C.G.S.X.
0.012e+036At4g29650829086cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseF:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPOC.G.S.X.
0.012e+036At4g16730827376lyase/ magnesium ion bindingF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.173e-58228Glycine maxGmaAffx.77691.1.S1_atBI786135--3e-59At1g05910cell division cycle protein 48-related / CDC48-relatedC.G.S.X.
0.022e-138Hordeum vulgareContig16263_atContig16263--1e+0At2g22310ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)C.G.S.X.
0.172e-69266Oryza sativaOs09g0515100AK110315.1-Bromodomain containing protein7e-62At1g05910cell division cycle protein 48-related / CDC48-relatedC.G.S.X.
0.112e-34149Populus trichocarpaPtpAffx.222257.1.S1_s_atpmrna39549bromodomain protein /// hypothetical protein /// bromodomain protein /// bromodomain protein-4e-35At1g05910cell division cycle protein 48-related / CDC48-relatedC.G.S.X.
0.106e-1997Triticum aestivumTa.23800.2.S1_atBJ207557--2e-16At1g05910cell division cycle protein 48-related / CDC48-relatedC.G.S.X.
0.015e-136Vitis vinifera1612034_atCF207955hypothetical protein LOC100265881-5e-1At5g62290nucleotide-sensitive chloride conductance regulator (ICln) family proteinC.G.S.X.
0.207e-66252Zea maysZm.12719.1.S1_atAF545811.1bromodomain protein 103-1e-57At1g05910cell division cycle protein 48-related / CDC48-relatedC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage