Gene omics information

Query gene ID At1g05880
Gene name nucleic acid binding / protein binding / structural molecule/ zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2930.3At1g05880837098nucleic acid binding / protein binding / structural molecule/ zinc ion bindingF:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPFS.X.H.G.
0.8089.8At3g486503769688-F:unknown;P:unknown;C:unknownS.X.H.G.
0.7888.6At1g57650842141-F:unknown;P:defense response;C:cellular_component unknown;PMBOFAVS.X.H.G.
0.7586.9At3g28890822523AtRLP43 (Receptor Like Protein 43)F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAVS.X.H.G.
0.6781.6At3g44350823560anac061 (Arabidopsis NAC domain containing protein 61)F:transcription factor activity;P:multicellular organismal development, response to chitin, regulation of transcription;C:cellular_component unknown;PS.X.H.G.
0.6176.7At5g24540832525BGLU31 (BETA GLUCOSIDASE 31)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFAS.X.H.G.
0.4457.2At4g11470826752protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4050.8At2g36440818218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.1912.7At1g16090838179WAKL7 (wall associated kinase-like 7)WAK-like kinaseS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
558.1100.0GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
498.3100.0E-MEXP-807-raw-cel-1173273252
497.6100.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
475.1100.0GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
401.5100.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
315.9100.0E-MEXP-807-raw-cel-1173273144
234.8100.0E-MEXP-739-raw-cel-1099467339
180.0100.0E-MEXP-828-raw-cel-1156922342
153.999.9E-MEXP-739-raw-cel-1099467384
109.599.9E-MEXP-739-raw-cel-1099467393
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.068e-756At2g31760817733zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVC.G.S.X.
0.053e-654At2g31770817734zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVC.G.S.X.
0.041e-552At2g31510817709IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPVC.G.S.X.
0.061e-242At2g31780817735protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVC.G.S.X.
0.012e-138At5g20480832170EFR (EF-TU RECEPTOR)Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK). Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu.C.G.S.X.
0.012e-138At4g02180827483DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOC.G.S.X.
0.022e-138At2g32360817797ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.017e-136At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxGmaAffx.20084.1.S1_atCA799812--1e-8At4g27690VPS26B (VACUOLAR PROTEIN SORTING 26B)C.G.S.X.
0.021e+034Hordeum vulgareEBpi07_SQ002_O14_atEBpi07_SQ002_O14--3e+0At2g26520unknown proteinC.G.S.X.
0.031e+036Oryza sativaOsAffx.21978.1.S1_at---0C.G.S.X.
0.024e+034Populus trichocarpaPtpAffx.4744.1.A1_atCV276459hypothetical protein-3e+0At3g04130pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.023e+034Triticum aestivumTaAffx.34031.2.S1_atCA679561--5e-6At3g22800leucine-rich repeat family protein / extensin family proteinC.G.S.X.
0.029e-134Vitis vinifera1609730_atCB348062hypothetical protein LOC100248652-7e-2At2g05520GRP-3 (GLYCINE-RICH PROTEIN 3)C.G.S.X.
0.025e+032Zea maysZm.17659.1.A1_atCF629386acyl-CoA-binding protein-7e-17At1g31812ACBP6 (acyl-CoA-binding protein 6)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage