CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g05700

Gene name leucine-rich repeat protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At1g05700 837077 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.65 79.6 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.61 76.7 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.61 76.7 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.60 75.7 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.56 73.0 At2g28160 817362 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. S.X. H.G.
0.55 70.6 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.55 70.6 At4g38830 830038 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.53 68.6 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.53 68.6 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
139.6 99.9 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
107.7 99.9 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
98.8 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.0 99.9 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
92.8 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
81.8 99.9 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
79.6 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
72.1 99.9 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
71.8 99.9 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
69.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 4e-16 87 At2g19230 816440 kinase F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.07 2e-8 61 At2g19210 816438 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.07 3e-7 57 At4g29990 829122 light repressible receptor protein kinase F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.08 3e-7 57 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. C.G. S.X.
0.02 5e-6 54 At4g29450 829066 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 2e-5 52 At5g38210 833803 serine/threonine protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 2e-5 52 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.05 2e-5 52 At1g51890 841616 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 3e-4 48 At3g26940 822312 CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1) Receptor-like cytoplasmic kinase, RLCKVII subfamily C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-4 50 Glycine max GmaAffx.4452.1.S1_at BE657843 stress-induced receptor-like kinase 2 - 1e-7 At3g21340 leucine-rich repeat protein kinase, putative C.G. S.X.
0.03 2e-4 48 Hordeum vulgare Contig20521_at Contig20521 - - 4e-4 At1g48210 serine/threonine protein kinase, putative C.G. S.X.
0.03 3e-3 46 Oryza sativa Os01g0810600 AK109802.1 - Protein kinase domain containing protein 1e-2 At1g51880 leucine-rich repeat protein kinase, putative C.G. S.X.
0.02 3e-5 52 Populus trichocarpa PtpAffx.208404.1.S1_at pmrna16704 hypothetical protein - 1e-7 At1g69910 protein kinase family protein C.G. S.X.
0.02 5e-3 44 Triticum aestivum Ta.7035.1.A1_a_at BJ319693 - - 1e-1 At1g76370 protein kinase, putative C.G. S.X.
0.02 1e-1 38 Vitis vinifera 1621082_a_at CF516167 hypothetical protein LOC100262185 - 3e-13 At5g02800 protein kinase family protein C.G. S.X.
0.02 2e-3 44 Zea mays Zm.6463.1.A1_at AW066999 hypothetical protein LOC100272541 - 2e-5 At2g28590 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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