Gene omics information

Query gene ID At1g05490
Gene name chr31 (chromatin remodeling 31)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At1g05490837051chr31 (chromatin remodeling 31)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:unknown;MOBFPVAS.X.H.G.
0.4050.8At4g02670828206AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPFS.X.H.G.
0.4050.8At5g56510835752APUM12 (ARABIDOPSIS PUMILIO 12)F:RNA binding, binding;P:unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.3846.7At1g48180841238unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2624.4At1g51300841553acyl-protein thioesterase-relatedF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
648.9100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
421.2100.0GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
262.6100.0GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
248.0100.0GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
158.499.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
151.099.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
133.999.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
128.499.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
118.299.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
102.299.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-450At3g24340822023chr40 (chromatin remodeling 40)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVAC.G.S.X.
0.019e-344At3g42670823287CHR38 (CHROMATIN REMODELING 38)Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.C.G.S.X.
0.011e-140At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBC.G.S.X.
0.011e-140At3g28540822484AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAVC.G.S.X.
0.011e-140At1g50750841497unknown proteinF:unknown;P:unknown;C:unknown;OPMFBAC.G.S.X.
0.015e-138At5g22750832338RAD5DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transferC.G.S.X.
0.015e-138At3g13600820562calmodulin-binding family proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.015e-138At2g43540818956unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.018e-138Glycine maxHgAffx.18640.1.S1_atCB825506--2e+0At2g19680mitochondrial ATP synthase g subunit family proteinC.G.S.X.
0.012e-242Hordeum vulgareContig15113_atContig15113--2e+0At3g60540sec61beta family proteinC.G.S.X.
0.011e+038Oryza sativaOs08g04995009636.m03939--5e-1At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)C.G.S.X.
0.012e-140Populus trichocarpaPtpAffx.209415.1.S1_x_atpmrna18646hypothetical protein-2e-3At2g25220ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseC.G.S.X.
0.014e-242Triticum aestivumTaAffx.105815.1.S1_atCA729527--3e-1At5g57080unknown proteinC.G.S.X.
0.014e-240Vitis vinifera1622359_atCK136964.1--3e-1At4g27310zinc finger (B-box type) family proteinC.G.S.X.
0.016e-240Zea maysZm.5029.1.A1_atAY109139.1hypothetical protein LOC100272501-2e+0At1g04445zinc finger (C2H2 type) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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