CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g05310

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At1g05310 837030 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVA S.X. H.G.
0.89 94.6 At5g19870 832108 unknown protein F:unknown;P:unknown;C:endomembrane system;MP S.X. H.G.
0.85 92.4 At1g47410 841146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.85 92.4 At4g08160 826365 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). S.X. H.G.
0.84 91.9 At5g07080 830599 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.77 88.0 At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein S.X. H.G.
0.76 87.4 At2g46760 819289 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMA S.X. H.G.
0.75 86.9 At2g38320 818412 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PMO S.X. H.G.
0.73 85.5 At5g12870 831127 MYB46 (MYB DOMAIN PROTEIN 46) Member of the R2R3 factor gene family. S.X. H.G.
0.72 84.8 At1g10800 837623 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
309.0 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
196.2 100.0 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
148.3 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
115.5 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
114.4 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
107.1 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
95.7 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
89.3 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
85.8 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
84.5 99.9 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-4 48 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.04 2e-3 44 At1g69940 843331 PPME1 Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers. C.G. S.X.
0.02 1e-1 38 At5g07430 830634 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.03 1e-1 38 At4g26840 828791 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. C.G. S.X.
0.03 1e-1 38 At3g17060 820963 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.04 6e-1 36 At5g07410 830632 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 6e-1 36 At5g47190 834765 ribosomal protein L19 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMF C.G. S.X.
0.01 6e-1 36 At3g24480 822038 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA C.G. S.X.
0.01 6e-1 36 At1g18860 838467 WRKY61 member of WRKY Transcription Factor; Group II-b C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-11 71 Glycine max Gma.13597.1.A1_at CD401381 - - 2e-37 At5g47500 pectinesterase family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig12524_at Contig12524 - - 5e-1 At1g05310 pectinesterase family protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os09g0571100 AK106869.1 - Pectinesterase family protein 4e-2 At3g17060 pectinesterase family protein C.G. S.X.
0.23 7e-23 109 Populus trichocarpa PtpAffx.213167.1.S1_at pmrna25759 hypothetical protein - 4e-23 At1g05310 pectinesterase family protein C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.107617.2.S1_x_at CA711491 - - 1e+0 At1g78590 NADK3 (NAD(H) KINASE 3) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1615574_at CB977067 hypothetical protein LOC100245304 - 7e-9 At2g45220 pectinesterase family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.7152.1.A1_at AY110483.1 hypothetical protein LOC100216962 - 7e-5 At5g47500 pectinesterase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage