CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g05300

Gene name ZIP5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At1g05300 837029 ZIP5 member of Fe(II) transporter isolog family S.X. H.G.
0.80 89.8 At1g64170 842721 ATCHX16 (CATION/H+ EXCHANGER 16) member of Putative Na+/H+ antiporter family S.X. H.G.
0.67 81.6 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. S.X. H.G.
0.57 73.8 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.55 70.6 At1g51890 841616 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.50 65.3 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.40 50.8 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
160.8 99.9 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
103.9 99.9 E-MEXP-1094-raw-cel-1379507273
103.4 99.9 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
94.5 99.9 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
86.5 99.9 E-MEXP-1094-raw-cel-1379507313
82.4 99.9 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
78.0 99.9 E-NASC-76-raw-cel-1359878900
73.2 99.9 E-NASC-76-raw-cel-1359879158
70.7 99.9 E-NASC-76-raw-cel-1359878976
61.6 99.8 GSM128674 Underwood_1-26_hrpA-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 2e-71 270 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. C.G. S.X.
0.05 6e-4 46 At5g62160 836336 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) member of Fe(II) transporter isolog family C.G. S.X.
0.02 3e-2 40 At4g29240 829045 leucine-rich repeat family protein / extensin family protein F:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 3e-2 40 At3g51120 824276 DNA binding / nucleic acid binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding, nucleic acid binding;P:histone modification, transcription initiation;C:nucleus;MOPBFV C.G. S.X.
0.01 3e-2 40 At3g62590 825433 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFMB C.G. S.X.
0.01 1e-1 38 At1g62440 842542 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2) encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis. C.G. S.X.
0.02 1e-1 38 At1g75550 843891 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA C.G. S.X.
0.02 1e-1 38 At1g63480 842654 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max HgAffx.20951.1.S1_at BI748802 - - 2e-1 At5g66450 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.03 3e-4 46 Hordeum vulgare Contig6817_at Contig6817 - - 2e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.03 1e-3 46 Oryza sativa Os11g0188700 9639.m00801 - - 2e-1 At4g11870 unknown protein C.G. S.X.
0.03 8e-4 46 Populus trichocarpa PtpAffx.201051.1.S1_at pmrna2071 multidrug/pheromone exporter, MDR family, ABC transporter family - 3e-3 At3g49300 proline-rich family protein C.G. S.X.
0.03 2e-3 44 Triticum aestivum Ta.28336.2.S1_at CA634978 - - 3e-1 At1g10588 - C.G. S.X.
0.04 2e-4 46 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.622.1.S1_at AF342809.1 tonoplast membrane integral protein ZmTIP3-2 - 4e-2 At2g01340 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage