Gene omics information

Query gene ID At1g05060
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2726.2At1g05060839336unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PS.X.H.G.
0.8994.6At2g46310819239CRF5 (CYTOKININ RESPONSE FACTOR 5)CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.S.X.H.G.
0.5773.8At1g32870840181ANAC13 (Arabidopsis thaliana NAC domain protein 13)F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMFS.X.H.G.
0.3846.7At4g27940828907mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOS.X.H.G.
0.3338.1At4g27585828868band 7 family proteinF:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFVS.X.H.G.
0.3133.8At3g61630825336CRF6 (CYTOKININ RESPONSE FACTOR 6)CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
356.8100.0GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
333.1100.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
298.8100.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
230.3100.0GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
58.299.8GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
54.299.8GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
39.299.8GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.099.7GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
33.199.7GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
32.799.7GSM142629MC002_ATH1_A3.1-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At4g26340828740F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.031e-138At1g26450839186beta-1,3-glucanase-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVAC.G.S.X.
0.014e-136At5g05130830395SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 7 functions;P:unknown;C:unknown;MOBFPVAC.G.S.X.
0.024e-136At3g03510821246phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;PC.G.S.X.
0.024e-136At1g78740844210-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e+034At5g13680831213ABO1 (ABA-OVERLY SENSITIVE 1)A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.C.G.S.X.
0.012e+034At5g28740832986transcription-coupled DNA repair protein-relatedF:binding;P:RNA processing;C:intracellular;MFOPBAC.G.S.X.
0.012e+034At4g16155827307dihydrolipoyl dehydrogenaseF:dihydrolipoyl dehydrogenase activity;P:cell redox homeostasis;C:chloroplast, chloroplast envelope;BOMAPFC.G.S.X.
0.042e+034At2g40080818596ELF4 (EARLY FLOWERING 4)Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxHgAffx.14098.1.S1_atCB373835--7e-1At1g05060unknown proteinC.G.S.X.
0.037e-134Hordeum vulgareContig12956_atContig12956--1e+0At1g05060unknown proteinC.G.S.X.
0.033e+034Oryza sativaOs01g01825009629.m00808-Hypothetical protein7e-1At1g05060unknown proteinC.G.S.X.
0.154e-859Populus trichocarpaPtp.6889.1.A1_atCV242890hypothetical protein-4e-8At1g05060unknown proteinC.G.S.X.
0.044e-136Triticum aestivumTaAffx.4544.1.S1_atCA742649--2e-36Atcg01040-C.G.S.X.
0.034e-134Vitis vinifera1618246_atCF207318--4e-6At5g20470myosin, putativeC.G.S.X.
0.031e+130Zea maysZmAffx.982.3.S1_atAI668278--3e+0At5g25570unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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