Gene omics information

Query gene ID At1g04985
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g04985839352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7586.9At5g58950836012protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVAS.X.H.G.
0.4659.8At5g22000832260RHF2A (RING-H2 GROUP F2A)encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.S.X.H.G.
0.3133.8At1g22200838825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFPS.X.H.G.
0.2726.2At4g20380827786zinc finger protein (LSD1)LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challengeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.799.8GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
33.999.7E-MEXP-285-raw-cel-440782725
33.499.7E-MEXP-285-raw-cel-440782791
31.599.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
31.499.7GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
31.499.7GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
28.399.7E-MEXP-1138-raw-cel-1432772938
25.199.6GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
24.399.6GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
23.699.6E-MEXP-1138-raw-cel-1432772906
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.037e-238At1g60710842365ATB2Encodes ATB2.C.G.S.X.
0.037e-238At1g10810837624aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPAC.G.S.X.
0.013e-136At1g61360842430S-locus lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAC.G.S.X.
0.033e-136At1g60680842362aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPAC.G.S.X.
0.021e+034At5g60960836217pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMC.G.S.X.
0.011e+034At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.041e+034At5g45580834596transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POC.G.S.X.
0.021e+034At4g28790829000basic helix-loop-helix (bHLH) family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;PMFBOC.G.S.X.
0.021e+034At4g28800829001transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PMFOVBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.2356.1.S1_atBQ629301--2e-6At1g61260unknown proteinC.G.S.X.
0.052e+032Hordeum vulgareHA30O21r_atHA30O21r--2e+0At4g35905unknown proteinC.G.S.X.
0.046e-136Oryza sativaOs04g0669100AK103123.1-Conserved hypothetical protein6e-1At1g04985unknown proteinC.G.S.X.
0.087e-652Populus trichocarpaPtp.2191.1.S1_atCK089935hypothetical protein-8e-6At1g04985unknown proteinC.G.S.X.
0.045e+032Triticum aestivumTaAffx.39452.2.S1_atCA743638--2e+0At1g04985unknown proteinC.G.S.X.
0.172e-1891Vitis vinifera1607224_atCB981011hypothetical protein LOC100263652-9e-18At1g04985unknown proteinC.G.S.X.
0.041e-136Zea maysZm.17724.3.S1_a_atCK370253--2e-1At1g04985unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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