Gene omics information

Query gene ID At1g04980
Gene name ATPDIL2-2 (PDI-LIKE 2-2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g04980839355ATPDIL2-2 (PDI-LIKE 2-2)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.S.X.H.G.
0.8693.1At1g14360837998UTR3 (UDP-GALACTOSE TRANSPORTER 3)F:pyrimidine nucleotide sugar transmembrane transporter activity;P:unknown;C:endomembrane system;MOPFS.X.H.G.
0.7586.9At4g29520829073-F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFAS.X.H.G.
0.6781.6At2g25110817049SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, membrane;FMOPS.X.H.G.
0.3541.6At5g61790836301calnexin 1 (CNX1)F:unfolded protein binding, calcium ion binding;P:protein folding;C:in 8 components;MOPFBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
39.099.8GSM244454Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep2_exp2GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
28.499.7E-MEXP-739-raw-cel-1099467303
27.299.7E-MEXP-739-raw-cel-1099467312
25.399.6GSM131127AtGen_B-13_1-6-4_REP1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
25.199.6GSM131113AtGen_B-41_3-6-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
24.699.6GSM131126AtGen_B-12_1-5-4_REP1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
23.799.6GSM131140AtGen_B-26_2-5-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
23.299.6GSM244447Arabidopsis wild-type_2-4 h_ Xanthomonas inoculated_biological rep2_exp2GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
23.199.6GSM184834Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 4GSE7639Expression analysis of root developmental zones after treatment with salt
21.999.6GSM184835Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5GSE7639Expression analysis of root developmental zones after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.721e-174613At2g32920817854ATPDIL2-3 (PDI-LIKE 2-3)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.C.G.S.X.
0.023e-344At1g21750838779ATPDIL1-1 (PDI-LIKE 1-1)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.C.G.S.X.
0.021e-242At1g77510844087ATPDIL1-2 (PDI-LIKE 1-2)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.C.G.S.X.
0.034e-240At5g60640836185ATPDIL1-4 (PDI-LIKE 1-4)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.C.G.S.X.
0.012e-138At1g67970843125AT-HSFA8member of Heat Stress Transcription Factor (Hsf) familyC.G.S.X.
0.017e-136At3g49050824066lipase class 3 family protein / calmodulin-binding heat-shock protein, putativeF:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFBC.G.S.X.
0.017e-136At2g03760814903STEncodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.192e-29131Glycine maxGmaAffx.71811.1.S1_atBG044519protein disulfide isomerse like protein-9e-14At2g32920ATPDIL2-3 (PDI-LIKE 2-3)C.G.S.X.
0.092e-1583Hordeum vulgareContig2442_atContig2442--4e-15At1g04980ATPDIL2-2 (PDI-LIKE 2-2)C.G.S.X.
0.232e-1895Oryza sativaOs09g0451500AK072941.1-Thioredoxin-related domain containing protein1e-18At1g04980ATPDIL2-2 (PDI-LIKE 2-2)C.G.S.X.
0.522e-75284Populus trichocarpaPtpAffx.4105.1.S1_atCV279245hypothetical protein-2e-75At1g04980ATPDIL2-2 (PDI-LIKE 2-2)C.G.S.X.
0.051e-1481Triticum aestivumTa.1050.1.S1_atBJ297406--2e-14At1g04980ATPDIL2-2 (PDI-LIKE 2-2)C.G.S.X.
0.269e-53206Vitis vinifera1618275_atBQ796511hypothetical protein LOC100243120-3e-52At1g04980ATPDIL2-2 (PDI-LIKE 2-2)C.G.S.X.
0.203e-1375Zea maysZm.4251.1.S1_atCF625068Protein disulfide isomerase-1e-12At1g04980ATPDIL2-2 (PDI-LIKE 2-2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0034976A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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