CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g04920

Gene name ATSPS3F (sucrose phosphate synthase 3F)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g04920 839382 ATSPS3F (sucrose phosphate synthase 3F) Encodes a protein with putative sucrose-phosphate synthase activity. S.X. H.G.
0.67 81.6 At4g12130 826821 aminomethyltransferase F:aminomethyltransferase activity;P:glycine catabolic process;C:cytoplasm;OBFMPA S.X. H.G.
0.67 81.6 At5g55470 835640 ATNHX3 member of Sodium proton exchanger family S.X. H.G.
0.44 57.2 At4g18920 827627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.19 12.7 At5g24130 832478 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
178.8 100.0 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
177.8 100.0 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
142.2 99.9 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
116.5 99.9 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
115.0 99.9 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
73.7 99.9 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
72.1 99.9 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
71.7 99.9 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
68.3 99.9 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
63.1 99.8 GSM106908 opr3_JA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 3e-17 91 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. C.G. S.X.
0.09 1e-16 89 At5g11110 830979 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation. C.G. S.X.
0.10 2e-15 85 At5g20280 832150 ATSPS1F (sucrose phosphate synthase 1F) Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted. C.G. S.X.
0.01 4e-1 38 At4g30220 829145 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;AMFOP C.G. S.X.
0.01 4e-1 38 At1g50500 841472 HIT1 (HEAT-INTOLERANT 1) encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress. C.G. S.X.
0.01 4e-1 38 At1g50970 841519 membrane trafficking VPS53 family protein F:transporter activity;P:transport;C:endomembrane system;MFOPBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-20 103 Glycine max Gma.2097.1.S1_at AW309489 - - 2e-76 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.02 8e-4 46 Hordeum vulgare Contig7277_at Contig7277 - - 3e-8 At5g11110 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) C.G. S.X.
0.14 1e-27 127 Oryza sativa Os01g0919400 AK121341.1 - Sucrose-phosphate synthase (EC 2.4.1.14)(UDP-glucose-fructose- phosphate glucosyltransferase) 7e-28 At1g04920 ATSPS3F (sucrose phosphate synthase 3F) C.G. S.X.
0.10 7e-16 87 Populus trichocarpa PtpAffx.141421.1.S1_at DN500621 hypothetical protein - 1e-158 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.15 8e-12 73 Triticum aestivum Ta.3972.2.S1_at BJ248938 Sucrose-phosphate synthase - 3e-12 At1g04920 ATSPS3F (sucrose phosphate synthase 3F) C.G. S.X.
0.06 9e-12 71 Vitis vinifera 1612883_at CF213322 hypothetical protein LOC100241955 - 2e-95 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.16 5e-20 99 Zea mays Zm.26.1.A1_at M97550.1 sucrose phosphate synthase1 - 1e-19 At1g04920 ATSPS3F (sucrose phosphate synthase 3F) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005985 The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.
L GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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