CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g04910

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At1g04910 839373 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;P S.X. H.G.
0.80 89.8 At1g67930 843121 Golgi transport complex protein-related F:unknown;P:unknown;C:chloroplast;OMFBPV S.X. H.G.
0.80 89.8 At3g24350 822024 SYP32 (SYNTAXIN OF PLANTS 32) member of Glycoside Hydrolase Family 17 S.X. H.G.
0.73 85.5 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB S.X. H.G.
0.61 76.7 At1g56590 842113 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.9 99.5 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
14.1 99.4 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
13.4 99.4 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.9 99.3 GSM265421 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.6 99.3 GSM252691 Section of Root from 270 mm to 340 mm harvested immediately rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
12.6 99.3 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.4 99.3 GSM265420 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.8 99.2 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.2 99.2 GSM252692 Section of Root from 270 mm to 340 mm harvested immediately rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
10.1 99.2 GSM266677 Arabidopsis, root cells, stele, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 42 At3g02250 821223 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-1 36 At5g01100 831831 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PM C.G. S.X.
0.01 3e+0 34 At5g09950 830856 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POFMB C.G. S.X.
0.01 3e+0 34 At5g38620 833852 MADS-box protein (AGL73) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF C.G. S.X.
0.01 3e+0 34 At5g25510 832626 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative F:protein phosphatase type 2A regulator activity;P:signal transduction;C:chloroplast, protein phosphatase type 2A complex;MPOF C.G. S.X.
0.01 3e+0 34 At5g19670 832087 exostosin family protein F:catalytic activity;P:biological_process unknown;C:membrane;PMOBF C.G. S.X.
0.01 3e+0 34 At5g61840 836306 GUT1 F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:Golgi apparatus, membrane;PMOBF C.G. S.X.
0.02 3e+0 34 At4g32020 829333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFM C.G. S.X.
0.01 3e+0 34 At4g18380 827567 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 6e-27 123 Glycine max GmaAffx.37222.1.S1_at BI425675 - - 2e-27 At1g04910 unknown protein C.G. S.X.
0.18 3e-23 109 Hordeum vulgare Contig11398_at Contig11398 - - 8e-23 At1g04910 unknown protein C.G. S.X.
0.17 3e-17 91 Oryza sativa Os11g0481200 AK068263.1 - Hypothetical plant protein family protein 2e-17 At1g04910 unknown protein C.G. S.X.
0.46 5e-83 309 Populus trichocarpa PtpAffx.10956.1.S1_a_at CV245371 hypothetical protein - 3e-83 At1g04910 unknown protein C.G. S.X.
0.04 9e-10 65 Triticum aestivum TaAffx.122407.1.S1_at CA656414 - - 3e-10 At1g04910 unknown protein C.G. S.X.
0.01 2e-1 36 Vitis vinifera 1609780_at CA810742 hypothetical protein LOC100249069 - 4e-1 At1g04910 unknown protein C.G. S.X.
0.17 2e-11 69 Zea mays Zm.13009.1.S1_at CA403238 growth regulator like protein - 8e-11 At1g04910 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage