CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g04610

Gene name flavin-containing monooxygenase / FMO (YUCCA3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At1g04610 839474 flavin-containing monooxygenase / FMO (YUCCA3) F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPA S.X. H.G.
0.86 93.1 At2g33230 817885 flavin-containing monooxygenase, putative / FMO, putative F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA S.X. H.G.
0.86 93.1 At2g46850 819298 ATP binding / protein kinase/ protein tyrosine kinase F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOFBV S.X. H.G.
0.75 86.9 At3g01840 820047 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOFBVA S.X. H.G.
0.75 86.9 At5g02070 831776 protein kinase-related F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
876.2 100.0 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
539.6 100.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
517.4 100.0 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
377.2 100.0 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
343.9 100.0 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
230.2 100.0 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
212.7 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
210.7 100.0 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
177.8 100.0 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
171.3 100.0 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 8e-56 218 At2g33230 817885 flavin-containing monooxygenase, putative / FMO, putative F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA C.G. S.X.
0.16 2e-16 87 At5g43890 834411 YUCCA5 Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype C.G. S.X.
0.14 8e-16 85 At5g11320 831003 YUC4 (YUCCA4) Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development. C.G. S.X.
0.23 1e-8 61 At4g28720 828993 flavin-containing monooxygenase family protein / FMO family protein F:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPA C.G. S.X.
0.14 1e-5 52 At1g04180 837024 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA C.G. S.X.
0.03 4e-5 50 At4g13260 826956 YUC2 (YUCCA2) F:NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity;P:auxin biosynthetic process;C:unknown;BOFMPA C.G. S.X.
0.02 7e-4 46 At5g25620 832638 YUC6 (YUCCA6) F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:auxin biosynthetic process;C:unknown;BOFMPA C.G. S.X.
0.06 4e-2 40 At4g32540 829389 YUC1 (YUCCA 1) Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin Biosynthesis C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max HgAffx.18659.1.S1_at CA940521 - - 2e+0 At5g48840 PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig11781_at Contig11781 - - 5e-3 At5g03460 unknown protein C.G. S.X.
0.02 3e-1 38 Oryza sativa Os08g0509100 AK066825.1 - Lipoxygenase, chloroplast precursor (EC1.13.11.12) 6e+0 At4g14723 - C.G. S.X.
0.20 6e-5 50 Populus trichocarpa PtpAffx.208604.1.S1_at pmrna17076 flavine-containing monoxygenase - 2e-28 At2g33230 flavin-containing monooxygenase, putative / FMO, putative C.G. S.X.
0.02 7e-1 36 Triticum aestivum Ta.26835.1.A1_at CD491386 - - 5e+0 At5g12140 ATCYS1 (A. thaliana cystatin-1) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1622849_at CB973338 - - 5e-1 At1g54530 calcium-binding EF hand family protein C.G. S.X.
0.02 3e-1 36 Zea mays Zm.16021.1.S1_at CD995560 low-molecular-weight cysteine-rich protein LCR68 - 1e+0 At1g60300 apical meristem formation protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009851 The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00380 Tryptophan metabolism
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