CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g04600

Gene name XIA (MYOSIN XI A)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At1g04600 839480 XIA (MYOSIN XI A) member of Myosin-like proteins S.X. H.G.
0.80 89.8 At4g35700 829722 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;P S.X. H.G.
0.76 87.4 At1g19890 838577 MGH3 (MALE-GAMETE-SPECIFIC HISTONE H3) histone 3.3, male-gamete-specific expression S.X. H.G.
0.74 86.1 At1g75870 843920 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.70 83.5 At1g49290 841352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.70 83.5 At1g68610 843191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
0.70 83.5 At1g04880 839388 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOPFBV S.X. H.G.
0.69 82.9 At3g16380 820885 PAB6 (POLY(A) BINDING PROTEIN 6) polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins. S.X. H.G.
0.59 74.7 At1g71770 843507 PAB5 (POLY(A)-BINDING PROTEIN 5) Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro. S.X. H.G.
0.56 73.0 At3g47440 823898 TIP5 Encodes AtTIP5;1, functions as water and urea channels in pollen. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
497.1 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
308.8 100.0 E-ATMX-35-raw-cel-1574334832
220.6 100.0 E-ATMX-35-raw-cel-1574334816
181.9 100.0 E-ATMX-35-raw-cel-1574334800
104.3 99.9 E-MEXP-1138-raw-cel-1432773290
98.4 99.9 E-MEXP-1138-raw-cel-1432773322
96.1 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
90.7 99.9 E-MEXP-1138-raw-cel-1432773034
88.1 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
78.5 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 0 2724 At2g33240 817886 XID member of Myosin-like proteins C.G. S.X.
0.16 2e-71 272 At4g28710 828991 XIH member of Myosin-like proteins C.G. S.X.
0.21 2e-69 266 At5g43900 834412 MYA2 (ARABIDOPSIS MYOSIN 2) Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner. C.G. S.X.
0.21 1e-67 260 At1g04160 839246 XIB (MYOSIN XI B) Encodes a member of the type XI myosin protein family involved in root hair elongation. C.G. S.X.
0.17 9e-59 230 At2g20290 816548 XIG member of Myosin-like proteins C.G. S.X.
0.12 5e-45 184 At5g20490 832171 XIK Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. C.G. S.X.
0.09 6e-32 141 At1g08730 837394 XIC Class XI myosin gene C.G. S.X.
0.14 2e-31 139 At1g17580 838333 MYA1 (MYOSIN 1) Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development. C.G. S.X.
0.07 2e-28 129 At4g33200 829456 XI-I member of Myosin-like proteins C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-14 81 Glycine max GmaAffx.6253.4.S1_at BI893603 - - 4e-8 At5g20490 XIK C.G. S.X.
0.02 8e-2 40 Hordeum vulgare Contig20373_at Contig20373 - - 2e-9 At4g28710 XIH C.G. S.X.
0.16 6e-80 301 Oryza sativa Os02g0816900 AK122154.1 - Myosin XI (Fragment) 2e-53 At1g04160 XIB (MYOSIN XI B) C.G. S.X.
0.35 5e-95 351 Populus trichocarpa PtpAffx.208230.1.S1_at pmrna16377 hypothetical protein - 3e-95 At1g04600 XIA (MYOSIN XI A) C.G. S.X.
0.01 2e-1 40 Triticum aestivum Ta.23457.2.S1_at CA660982 - - 1e-22 At1g50360 VIIIA C.G. S.X.
0.12 2e-72 274 Vitis vinifera 1619609_at CB976068 hypothetical protein LOC100256590 - 6e-62 At5g43900 MYA2 (ARABIDOPSIS MYOSIN 2) C.G. S.X.
0.17 2e-73 278 Zea mays Zm.450.1.S1_at CN845202 myosin XI - 1e-78 At2g33240 XID C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0030048 Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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