Gene omics information

Query gene ID At1g04600
Gene name XIA (MYOSIN XI A)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At1g04600839480XIA (MYOSIN XI A)member of Myosin-like proteinsS.X.H.G.
0.8089.8At4g35700829722zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PS.X.H.G.
0.7687.4At1g19890838577MGH3 (MALE-GAMETE-SPECIFIC HISTONE H3)histone 3.3, male-gamete-specific expressionS.X.H.G.
0.7486.1At1g75870843920unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7083.5At1g49290841352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.7083.5At1g68610843191unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOS.X.H.G.
0.7083.5At1g04880839388high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOPFBVS.X.H.G.
0.6982.9At3g16380820885PAB6 (POLY(A) BINDING PROTEIN 6)polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.S.X.H.G.
0.5974.7At1g71770843507PAB5 (POLY(A)-BINDING PROTEIN 5)Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro.S.X.H.G.
0.5673.0At3g47440823898TIP5Encodes AtTIP5;1, functions as water and urea channels in pollen.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
497.1100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
96.199.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
88.199.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7802724At2g33240817886XIDmember of Myosin-like proteinsC.G.S.X.
0.162e-71272At4g28710828991XIHmember of Myosin-like proteinsC.G.S.X.
0.212e-69266At5g43900834412MYA2 (ARABIDOPSIS MYOSIN 2)Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner.C.G.S.X.
0.211e-67260At1g04160839246XIB (MYOSIN XI B)Encodes a member of the type XI myosin protein family involved in root hair elongation.C.G.S.X.
0.179e-59230At2g20290816548XIGmember of Myosin-like proteinsC.G.S.X.
0.125e-45184At5g20490832171XIKEncodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.C.G.S.X.
0.096e-32141At1g08730837394XICClass XI myosin geneC.G.S.X.
0.142e-31139At1g17580838333MYA1 (MYOSIN 1)Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.C.G.S.X.
0.072e-28129At4g33200829456XI-Imember of Myosin-like proteinsC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-1481Glycine maxGmaAffx.6253.4.S1_atBI893603--4e-8At5g20490XIKC.G.S.X.
0.028e-240Hordeum vulgareContig20373_atContig20373--2e-9At4g28710XIHC.G.S.X.
0.166e-80301Oryza sativaOs02g0816900AK122154.1-Myosin XI (Fragment)2e-53At1g04160XIB (MYOSIN XI B)C.G.S.X.
0.355e-95351Populus trichocarpaPtpAffx.208230.1.S1_atpmrna16377hypothetical protein-3e-95At1g04600XIA (MYOSIN XI A)C.G.S.X.
0.012e-140Triticum aestivumTa.23457.2.S1_atCA660982--1e-22At1g50360VIIIAC.G.S.X.
0.122e-72274Vitis vinifera1619609_atCB976068hypothetical protein LOC100256590-6e-62At5g43900MYA2 (ARABIDOPSIS MYOSIN 2)C.G.S.X.
0.172e-73278Zea maysZm.450.1.S1_atCN845202myosin XI-1e-78At2g33240XIDC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0030048Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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