Gene omics information

Query gene ID At1g04550
Gene name IAA12 (AUXIN-INDUCED PROTEIN 12)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g04550839495IAA12 (AUXIN-INDUCED PROTEIN 12)IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristemS.X.H.G.
0.3643.6At2g26770817218plectin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.3541.6At1g29950839873transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;OPMFBVS.X.H.G.
0.3338.1At4g08980826476F-box family protein (FBW2)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MPOFS.X.H.G.
0.3338.1At5g49230834983HRB1 (HYPERSENSITIVE TO RED AND BLUE)Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.S.X.H.G.
0.3338.1At1g16680838237DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.3133.8At5g01090831840legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:endomembrane system;PBS.X.H.G.
0.3133.8At1g60800842374NIK3 (NSP-INTERACTING KINASE 3)F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
0.3032.1At2g22670816798IAA8IAA8 (IAA8) gene is auxin inducible.S.X.H.G.
0.2930.3At3g50780824242-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
35.999.7GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.499.7GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
26.299.7GSM142636MC002_ATH1_A5.2-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
24.499.6GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
23.499.6GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
23.299.6GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
22.799.6GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.999.6GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
20.599.6GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
20.499.6GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.491e-49196At2g33310817894IAA13Auxin induced gene, IAA13 (IAA13).C.G.S.X.
0.072e-240At4g28640828982IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)Auxin induced gene, IAA11 (IAA11).C.G.S.X.
0.036e-238At4g29080829029PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)phytochrome-associated protein 2 (PAP2)C.G.S.X.
0.013e-136At4g29940829117PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A)Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.C.G.S.X.
0.023e-136At3g16150820860L-asparaginase, putative / L-asparagine amidohydrolase, putativeF:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-240Glycine maxGma.13174.3.S1_a_atBM732148--1e-2At2g33310IAA13C.G.S.X.
0.045e-134Hordeum vulgareContig24279_atContig24279--1e-1At1g22890unknown proteinC.G.S.X.
0.042e+034Oryza sativaOsAffx.30337.1.S1_at---0C.G.S.X.
0.044e-446Populus trichocarpaPtpAffx.208591.1.S1_atpmrna17048hypothetical protein-3e-14At2g33310IAA13C.G.S.X.
0.041e+034Triticum aestivumTaAffx.92327.1.S1_atBJ270633--9e-1At5g66815unknown proteinC.G.S.X.
0.035e+030Vitis vinifera1619103_s_atCF206471.1hypothetical protein LOC100256831-7e-1At2g33330PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3)C.G.S.X.
0.034e-134Zea maysZm.7873.1.A1_atBQ539119--1e+0At1g04550IAA12 (AUXIN-INDUCED PROTEIN 12)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010051The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana.
XGO:0048364The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0009880The process that results in the patterns of cell differentiation that will arise in an embryo.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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