Gene omics information

Query gene ID At1g04540
Gene name C2 domain-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g04540839498C2 domain-containing proteinF:unknown;P:biological_process unknown;C:membrane;PMOFBS.X.H.G.
0.9095.1At3g20580821605COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PS.X.H.G.
0.8693.1At1g58120842179unknown proteinF:unknown;P:unknown;C:unknown;PS.X.H.G.
0.8491.9At5g12000831073kinaseF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAS.X.H.G.
0.8290.9At2g26450817185pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOS.X.H.G.
0.8190.4At3g06260819800GATL4 (Galacturonosyltransferase-like 4)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
0.7989.1At2g07040815274PRK2APollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth.S.X.H.G.
0.7687.4At3g20190821563leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVAS.X.H.G.
0.7586.9At5g58170835929SVL5 (SHV3-LIKE 5)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMFS.X.H.G.
0.7083.5At3g09530820110ATEXO70H3 (exocyst subunit EXO70 family protein H3)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
133.099.9GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.422e-63244At2g33320817895C2 domain-containing proteinF:unknown;P:unknown;C:unknown;OMPFBAVC.G.S.X.
0.016e-240At3g47800823934aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPAC.G.S.X.
0.012e-138At2g45420819150LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)F:unknown;P:xylem histogenesis;C:nucleus;MPBOFVAC.G.S.X.
0.019e-136At3g13220820512ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPVC.G.S.X.
0.029e-136At3g57930824962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVC.G.S.X.
0.019e-136At2g42300818831basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFC.G.S.X.
0.019e-136At1g54930841933zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMOFAC.G.S.X.
0.019e-136At1g76290843962AMP-dependent synthetase and ligase family proteinF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxHgAffx.8803.1.S1_atCB379698--5e+0At5g12110elongation factor 1B alpha-subunit 1 (eEF1Balpha1)C.G.S.X.
0.021e-138Hordeum vulgareHZ49F08r_atHZ49F08r--4e+0At4g00893-C.G.S.X.
0.012e+036Oryza sativaOsAffx.12740.1.S1_s_at---0C.G.S.X.
0.033e-138Populus trichocarpaPtpAffx.211025.1.S1_atpmrna21663hypothetical protein-1e-1At1g04540C2 domain-containing proteinC.G.S.X.
0.024e+034Triticum aestivumTaAffx.104641.1.S1_atCA746774--8e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeC.G.S.X.
0.017e-238Vitis vinifera1617279_atBQ796438hypothetical protein LOC100251912-3e-2At2g25700ASK3 (ARABIDOPSIS SKP1-LIKE 3)C.G.S.X.
0.012e+034Zea maysZm.3419.1.S1_atCF272935thioredoxin h2 protein-1e-1At2g35010ATO1 (Arabidopsis thioredoxin O1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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