CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g04540

Gene name C2 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g04540 839498 C2 domain-containing protein F:unknown;P:biological_process unknown;C:membrane;PMOFB S.X. H.G.
0.90 95.1 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.86 93.1 At1g58120 842179 unknown protein F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.84 91.9 At5g12000 831073 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.82 90.9 At2g26450 817185 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.81 90.4 At3g06260 819800 GATL4 (Galacturonosyltransferase-like 4) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.79 89.1 At2g07040 815274 PRK2A Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. S.X. H.G.
0.76 87.4 At3g20190 821563 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVA S.X. H.G.
0.75 86.9 At5g58170 835929 SVL5 (SHV3-LIKE 5) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF S.X. H.G.
0.70 83.5 At3g09530 820110 ATEXO70H3 (exocyst subunit EXO70 family protein H3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
167.6 100.0 E-MEXP-285-raw-cel-440782725
146.8 99.9 E-MEXP-1138-raw-cel-1432772522
141.1 99.9 E-MEXP-1138-raw-cel-1432772874
140.8 99.9 E-MEXP-1138-raw-cel-1432772586
140.2 99.9 E-MEXP-1138-raw-cel-1432773130
135.9 99.9 E-MEXP-1138-raw-cel-1432772906
135.7 99.9 E-MEXP-1138-raw-cel-1432772618
133.0 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
129.3 99.9 E-MEXP-1138-raw-cel-1432772714
128.8 99.9 E-MEXP-1138-raw-cel-1432772554
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 2e-63 244 At2g33320 817895 C2 domain-containing protein F:unknown;P:unknown;C:unknown;OMPFBAV C.G. S.X.
0.01 6e-2 40 At3g47800 823934 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPA C.G. S.X.
0.01 2e-1 38 At2g45420 819150 LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18) F:unknown;P:xylem histogenesis;C:nucleus;MPBOFVA C.G. S.X.
0.01 9e-1 36 At3g13220 820512 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPV C.G. S.X.
0.02 9e-1 36 At3g57930 824962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBV C.G. S.X.
0.01 9e-1 36 At2g42300 818831 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF C.G. S.X.
0.01 9e-1 36 At1g54930 841933 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMOFA C.G. S.X.
0.01 9e-1 36 At1g76290 843962 AMP-dependent synthetase and ligase family protein F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max HgAffx.8803.1.S1_at CB379698 - - 5e+0 At5g12110 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare HZ49F08r_at HZ49F08r - - 4e+0 At4g00893 - C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.12740.1.S1_s_at - - - 0 C.G. S.X.
0.03 3e-1 38 Populus trichocarpa PtpAffx.211025.1.S1_at pmrna21663 hypothetical protein - 1e-1 At1g04540 C2 domain-containing protein C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.104641.1.S1_at CA746774 - - 8e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.01 7e-2 38 Vitis vinifera 1617279_at BQ796438 hypothetical protein LOC100251912 - 3e-2 At2g25700 ASK3 (ARABIDOPSIS SKP1-LIKE 3) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.3419.1.S1_at CF272935 thioredoxin h2 protein - 1e-1 At2g35010 ATO1 (Arabidopsis thioredoxin O1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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