CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g04380

Gene name 2-oxoglutarate-dependent dioxygenase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.96 97.3 At1g04380 839535 2-oxoglutarate-dependent dioxygenase, putative encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase S.X. H.G.
0.96 97.3 At4g33330 829469 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVO S.X. H.G.
0.96 97.3 At5g03810 831715 carboxylesterase/ hydrolase, acting on ester bonds / lipase F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.96 97.3 At5g12460 831121 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMO S.X. H.G.
0.93 96.4 At1g71250 843466 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.92 96.0 At1g71120 843452 GLIP6 Contains lipase signature motif and GDSL domain. S.X. H.G.
0.92 96.0 At2g14690 815957 endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a putative glycosyl hydrolase family 10 protein (xylanase). S.X. H.G.
0.90 95.1 At1g50650 841487 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOM S.X. H.G.
0.90 95.1 At1g68510 843180 LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42) F:unknown;P:biological_process unknown;C:unknown;PF S.X. H.G.
0.90 95.1 At3g08900 820039 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3) Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
727.5 100.0 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
536.1 100.0 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
214.6 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
149.6 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
147.6 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
143.3 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
142.1 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.1 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
112.6 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
110.5 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 7e-167 587 At1g04350 839542 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase C.G. S.X.
0.66 1e-112 406 At5g59540 836073 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.58 9e-80 297 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM C.G. S.X.
0.48 1e-63 244 At5g43440 834364 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase C.G. S.X.
0.42 2e-40 167 At5g43450 834365 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase C.G. S.X.
0.13 2e-10 67 At1g06650 837175 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 34 Glycine max GmaAffx.59210.1.S1_at BI967182 - - 5e-2 At1g03400 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.03 4e+0 32 Hordeum vulgare EBem10_SQ002_L14_s_at EBem10_SQ002_L14 - - 5e+0 At2g31335 unknown protein C.G. S.X.
0.03 4e+0 34 Oryza sativa OsAffx.2170.1.S1_s_at - - - 0 C.G. S.X.
0.05 8e-7 56 Populus trichocarpa PtpAffx.208719.1.S1_at pmrna17289 hypothetical protein - 9e-9 At1g06620 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.07 5e-1 36 Triticum aestivum TaAffx.31520.1.S1_at CA614210 - - 5e-5 At1g04350 2-oxoglutarate-dependent dioxygenase, putative C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1618362_s_at CF200684.1 hypothetical protein LOC100255189 - 2e-74 At1g10670 ACLA-1 C.G. S.X.
0.02 2e-1 36 Zea mays Zm.12414.1.A1_at CK826656 trafficking protein particle complex protein 2 - 1e-1 At1g80500 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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