Gene omics information

Query gene ID At1g04380
Gene name 2-oxoglutarate-dependent dioxygenase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9697.3At1g043808395352-oxoglutarate-dependent dioxygenase, putativeencodes a protein similar to a 2-oxoglutarate-dependent dioxygenaseS.X.H.G.
0.9697.3At4g33330829469transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFBVOS.X.H.G.
0.9697.3At5g03810831715carboxylesterase/ hydrolase, acting on ester bonds / lipaseF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMS.X.H.G.
0.9697.3At5g12460831121-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMOS.X.H.G.
0.9396.4At1g71250843466GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.9296.0At1g71120843452GLIP6Contains lipase signature motif and GDSL domain.S.X.H.G.
0.9296.0At2g14690815957endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compoundsEncodes a putative glycosyl hydrolase family 10 protein (xylanase).S.X.H.G.
0.9095.1At1g50650841487stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPFOMS.X.H.G.
0.9095.1At1g68510843180LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)F:unknown;P:biological_process unknown;C:unknown;PFS.X.H.G.
0.9095.1At3g08900820039RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
727.5100.0GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
536.1100.0GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
214.6100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
149.699.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
147.699.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
143.399.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
142.199.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.199.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
112.699.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
110.599.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.687e-167587At1g043508395422-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
0.661e-112406At5g59540836073oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMC.G.S.X.
0.589e-80297At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMC.G.S.X.
0.481e-63244At5g434408343642-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseC.G.S.X.
0.422e-40167At5g434508343652-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseC.G.S.X.
0.132e-1067At1g066508371752-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e+034Glycine maxGmaAffx.59210.1.S1_atBI967182--5e-2At1g034002-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.034e+032Hordeum vulgareEBem10_SQ002_L14_s_atEBem10_SQ002_L14--5e+0At2g31335unknown proteinC.G.S.X.
0.034e+034Oryza sativaOsAffx.2170.1.S1_s_at---0C.G.S.X.
0.058e-756Populus trichocarpaPtpAffx.208719.1.S1_atpmrna17289hypothetical protein-9e-9At1g066202-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.075e-136Triticum aestivumTaAffx.31520.1.S1_atCA614210--5e-5At1g043502-oxoglutarate-dependent dioxygenase, putativeC.G.S.X.
0.026e-134Vitis vinifera1618362_s_atCF200684.1hypothetical protein LOC100255189-2e-74At1g10670ACLA-1C.G.S.X.
0.022e-136Zea maysZm.12414.1.A1_atCK826656trafficking protein particle complex protein 2-1e-1At1g80500-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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