CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g04220

Gene name KCS2 (3-KETOACYL-COA SYNTHASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.36 43.6 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV S.X. H.G.
0.33 38.1 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA S.X. H.G.
0.33 38.1 At5g41040 834106 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO S.X. H.G.
0.13 5.8 At4g17280 827442 - F:unknown;P:multicellular organismal development;C:membrane;P S.X. H.G.
0.13 5.8 At3g10340 820196 PAL4 (Phenylalanine ammonia-lyase 4) F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.9 99.8 E-MEXP-475-raw-cel-680982449
61.7 99.8 E-MEXP-285-raw-cel-440783213
57.6 99.8 E-MEXP-285-raw-cel-440783152
53.5 99.8 GSM142784 HO001_ATH1_A1-Okamo-gpal-ABA GSE6171 Comparative transcriptome analysis between wild-type and gpa1 mutant in response to ABA
51.5 99.8 GSM131175 AtGen_D-7_1-UL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
42.9 99.8 E-MEXP-475-raw-cel-680982503
41.8 99.8 E-MEXP-285-raw-cel-440783273
39.7 99.8 GSM142786 HO001_ATH1_A3-Okamo-WS-ABA GSE6171 Comparative transcriptome analysis between wild-type and gpa1 mutant in response to ABA
39.5 99.8 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
39.2 99.8 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 1118 At5g43760 834398 KCS20 (3-KETOACYL-COA SYNTHASE 20) Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.19 4e-24 113 At2g16280 816124 KCS9 (3-KETOACYL-COA SYNTHASE 9) Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.17 3e-22 107 At4g34510 829602 KCS17 (3-KETOACYL-COA SYNTHASE 17) Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.20 1e-21 105 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. C.G. S.X.
0.29 6e-14 79 At2g26640 817205 KCS11 (3-KETOACYL-COA SYNTHASE 11) Encodes KCS11, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.10 6e-14 79 At2g15090 815998 KCS8 (3-KETOACYL-COA SYNTHASE 8) Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.10 9e-13 75 At4g34520 829603 KCS18 Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.10 9e-13 75 At4g34250 829574 KCS16 (3-KETOACYL-COA SYNTHASE 16) Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.12 4e-12 73 At1g19440 838528 KCS4 (3-KETOACYL-COA SYNTHASE 4) Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-27 125 Glycine max Gma.10713.1.S1_a_at CD406424 - - 4e-30 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.15 5e-16 85 Hordeum vulgare Contig15532_at Contig15532 - - 3e-17 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.11 5e-16 87 Oryza sativa Os06g0598800 AK101377.1 - Fatty acid elongase 1-like protein 1e-28 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.24 9e-23 109 Populus trichocarpa Ptp.6592.1.A1_s_at CK319937 hypothetical protein /// beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein - 4e-30 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.07 2e-13 77 Triticum aestivum TaAffx.44236.1.S1_at CK215050 - - 2e-13 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) C.G. S.X.
0.19 5e-21 101 Vitis vinifera 1612105_at CF415846 hypothetical protein LOC100263066 - 4e-19 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.08 4e-16 85 Zea mays Zm.295.1.A1_at AI065608 fae2 protein - 2e-20 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006970 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
X GO:0010345 The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00040 Fatty acid elongation and wax biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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