CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g03630

Gene name POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At1g03630 839009 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE) Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. S.X. H.G.
0.74 86.1 At1g55480 841995 binding / protein binding F:protein binding, binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;PBOMF S.X. H.G.
0.72 84.8 At1g15980 838168 NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. S.X. H.G.
0.72 84.8 At5g36700 833635 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAP S.X. H.G.
0.71 84.2 At1g09340 837455 CRB (CHLOROPLAST RNA BINDING) Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes. S.X. H.G.
0.71 84.2 At1g56500 842103 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, oxidoreductase activity, catalytic activity;P:metabolic process, cell redox homeostasis;C:chloroplast, chloroplast stroma;BOMPAFV S.X. H.G.
0.69 82.9 At3g63140 825489 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation. S.X. H.G.
0.68 82.2 At3g54050 824572 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative F:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFA S.X. H.G.
0.67 81.6 At3g55800 824746 SBPASE (sedoheptulose-bisphosphatase) Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type. S.X. H.G.
0.67 81.6 At5g19220 832042 APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1) Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.9 99.4 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.9 99.3 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.9 99.2 E-ATMX-33-raw-cel-1562596152
10.2 99.2 GSM157393 Sakakibara_1-12_DMSO-treatment-mutant_Rep3_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
10.1 99.2 GSM157391 Sakakibara_1-10_DMSO-treatment-mutant_Rep1_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
9.9 99.1 GSM157388 Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
9.6 99.1 GSM157390 Sakakibara_1-9_DMSO-treatment-wild_Rep3_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
9.3 99.1 E-ATMX-33-raw-cel-1562596310
9.1 99.1 GSM157389 Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
8.6 99.0 GSM237293 Shoot control rep2 GSE9311 Gene expression in roots and shoots of plants grown on selenate
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.40 6e-32 139 At5g54190 835507 PORA light-dependent NADPH:protochlorophyllide oxidoreductase A C.G. S.X.
0.48 3e-30 133 At4g27440 828853 PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B) light-dependent NADPH:protochlorophyllide oxidoreductase B C.G. S.X.
0.01 2e-1 38 At1g69550 843291 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF C.G. S.X.
0.01 6e-1 36 At5g16750 831538 TOZ (TORMOZEMBRYO DEFECTIVE) Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. C.G. S.X.
0.01 2e+0 34 At5g61070 836228 HDA18 Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation. C.G. S.X.
0.02 2e+0 34 At5g60780 836199 ATNRT2.3 member of High affinity nitrate transporter family C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 2e-35 151 Glycine max Gma.2542.1.S1_at CD409405 - - 5e-42 At4g27440 PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B) C.G. S.X.
0.17 8e-5 48 Hordeum vulgare Contig2766_s_at Contig2766 - - 7e-5 At1g03630 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE) C.G. S.X.
0.02 1e+0 36 Oryza sativa Os04g0298200 CB676847 - Cation efflux protein family protein 5e-13 At1g51610 cation efflux family protein / metal tolerance protein, putative (MTPc4) C.G. S.X.
0.41 4e-55 216 Populus trichocarpa Ptp.4587.1.S1_x_at BP934936 hypothetical protein - 3e-86 At4g27440 PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B) C.G. S.X.
0.20 2e-10 67 Triticum aestivum Ta.3258.3.S1_x_at CA718193 - - 7e-11 At1g03630 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE) C.G. S.X.
0.14 4e-33 141 Vitis vinifera 1619717_at CF210684 hypothetical protein LOC100255647 - 1e-67 At5g54190 PORA C.G. S.X.
0.17 2e-8 59 Zea mays Zm.7043.2.S1_a_at CO528824 hypothetical protein LOC100194154 - 5e-8 At1g03630 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0015995 The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00028 Biosynthesis of chlorophyll, proto- and siroheme

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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