Gene omics information

Query gene ID At1g03630
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7687.4At1g03630839009POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.S.X.H.G.
0.7486.1At1g55480841995binding / protein bindingF:protein binding, binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;PBOMFS.X.H.G.
0.7284.8At1g15980838168NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.S.X.H.G.
0.7284.8At5g36700833635PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAPS.X.H.G.
0.7184.2At1g09340837455CRB (CHLOROPLAST RNA BINDING)Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.S.X.H.G.
0.7184.2At1g56500842103haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, oxidoreductase activity, catalytic activity;P:metabolic process, cell redox homeostasis;C:chloroplast, chloroplast stroma;BOMPAFVS.X.H.G.
0.6982.9At3g63140825489CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.S.X.H.G.
0.6882.2At3g54050824572fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeF:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFAS.X.H.G.
0.6781.6At3g55800824746SBPASE (sedoheptulose-bisphosphatase)Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.S.X.H.G.
0.6781.6At5g19220832042APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)Encodes the large subunit of ADP-glucose pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL1 is the major large subunit isoform present in leaves. Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.999.4GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.999.3GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.299.2GSM157393Sakakibara_1-12_DMSO-treatment-mutant_Rep3_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
10.199.2GSM157391Sakakibara_1-10_DMSO-treatment-mutant_Rep1_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
9.999.1GSM157388Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
9.699.1GSM157390Sakakibara_1-9_DMSO-treatment-wild_Rep3_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
9.199.1GSM157389Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
8.699.0GSM237293Shoot control rep2GSE9311Gene expression in roots and shoots of plants grown on selenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.406e-32139At5g54190835507PORAlight-dependent NADPH:protochlorophyllide oxidoreductase AC.G.S.X.
0.483e-30133At4g27440828853PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)light-dependent NADPH:protochlorophyllide oxidoreductase BC.G.S.X.
0.012e-138At1g69550843291disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMFC.G.S.X.
0.016e-136At5g16750831538TOZ (TORMOZEMBRYO DEFECTIVE)Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.C.G.S.X.
0.012e+034At5g61070836228HDA18Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.C.G.S.X.
0.022e+034At5g60780836199ATNRT2.3member of High affinity nitrate transporter familyC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.392e-35151Glycine maxGma.2542.1.S1_atCD409405--5e-42At4g27440PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)C.G.S.X.
0.178e-548Hordeum vulgareContig2766_s_atContig2766--7e-5At1g03630POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)C.G.S.X.
0.021e+036Oryza sativaOs04g0298200CB676847-Cation efflux protein family protein5e-13At1g51610cation efflux family protein / metal tolerance protein, putative (MTPc4)C.G.S.X.
0.414e-55216Populus trichocarpaPtp.4587.1.S1_x_atBP934936hypothetical protein-3e-86At4g27440PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)C.G.S.X.
0.202e-1067Triticum aestivumTa.3258.3.S1_x_atCA718193--7e-11At1g03630POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)C.G.S.X.
0.144e-33141Vitis vinifera1619717_atCF210684hypothetical protein LOC100255647-1e-67At5g54190PORAC.G.S.X.
0.172e-859Zea maysZm.7043.2.S1_a_atCO528824hypothetical protein LOC100194154-5e-8At1g03630POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0015995The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00028Link to KaPPA-View 4Biosynthesis of chlorophyll, proto- and siroheme

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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