Gene omics information

Query gene ID At1g03360
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At1g03360839521ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFPS.X.H.G.
0.6075.7At2g19385816457zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBS.X.H.G.
0.5065.3At1g52930841726brix domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.4457.2At3g12270820407PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPAS.X.H.G.
0.4050.8At1g04870839393PRMT10Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
46.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
28.699.7GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
28.599.7GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
27.199.7GSM242954Mock day 1 (day1E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
26.899.7GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-136At3g07610819952IBM1 (increase in bonsai methylation 1)IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase.C.G.S.X.
0.012e+034At5g54380835526THE1 (THESEUS1)F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.022e+034At4g03950825705glucose-6-phosphate/phosphate translocator, putativeF:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFBC.G.S.X.
0.022e+034At3g23090821884-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBAC.G.S.X.
0.022e+034At3g52230824388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PMC.G.S.X.
0.012e+034At1g71270843468POK (POKY POLLEN TUBE)Encodes a homolog of the yeast Vps52p/SAC2. Involved in pollen tube germination and growth. Located in multiple endomembrane organelles including the golgi. The yeast protein has been shown to be located at the late Golgi and to function in a complex involved in retrograde trafficking of vesicles between the early endosomal compartment and the trans-Golgi network.C.G.S.X.
0.012e+034At1g69360843268unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFC.G.S.X.
0.028e+032At5g41810834186unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.163e-21103Glycine maxGmaAffx.63608.1.S1_atBG406170--2e-21At1g03360ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)C.G.S.X.
0.036e-238Hordeum vulgareHT09C18u_atHT09C18u--4e-2At1g03360ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)C.G.S.X.
0.043e-448Oryza sativaOs04g0520000AK073454.1-Nucleic acid-binding OB-fold domain containingprotein4e-4At1g03360ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)C.G.S.X.
0.155e-1789Populus trichocarpaPtp.4077.1.S1_atCV266405hypothetical protein-6e-17At1g03360ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)C.G.S.X.
0.025e-136Triticum aestivumTa.9400.3.S1_x_atCA699028--1e-6At3g15353MT3 (METALLOTHIONEIN 3)C.G.S.X.
0.032e+032Vitis vinifera1619771_s_atCD798243geranyl diphosphate synthase-1e+0At5g64350FKBP12 (FK506-BINDING PROTEIN)C.G.S.X.
0.038e-134Zea maysZm.3025.1.S1_atAW288746--1e+1At5g11500unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

03018Link to KEGG PATHWAYRNA degradation
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