CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g03080

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At1g03080 838350 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV S.X. H.G.
0.13 5.8 At5g55860 835681 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV S.X. H.G.
0.07 1.9 At1g53590 841794 NTMC2T6.1 F:unknown;P:unknown;C:plasma membrane, vacuole;MPOFBV S.X. H.G.
0.04 0.9 At4g24400 828542 CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. S.X. H.G.
0.04 0.9 At5g20730 832196 NPH4 (NON-PHOTOTROPHIC HYPOCOTYL) Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
61.2 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.1 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.4 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.0 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.0 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.1 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.4 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.3 99.5 GSM131342 AtGen_6-4222_Droughtstress-Roots-1.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
17.0 99.5 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.1 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 5e-54 214 At4g02710 828199 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.04 5e-14 81 At3g22790 821850 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.02 4e-5 52 At2g30500 817600 kinase interacting family protein F:unknown;P:unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 2e-1 40 At4g20050 827750 QRT3 (QUARTET 3) Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development. C.G. S.X.
0.01 2e-1 40 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.02 2e-1 40 At1g03470 839494 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 44 Glycine max GmaAffx.38948.1.S1_at AW102496 - - 3e-1 At3g53490 unknown protein C.G. S.X.
0.02 3e-1 38 Hordeum vulgare Contig9465_s_at Contig9465 - - 7e-4 At2g47920 kinase interacting family protein C.G. S.X.
0.04 1e-16 91 Oryza sativa OsAffx.24932.2.S1_x_at - - - 0 C.G. S.X.
0.06 4e-37 159 Populus trichocarpa PtpAffx.28135.1.S1_at CK096581 - - 9e-12 At4g02710 kinase interacting family protein C.G. S.X.
0.01 2e-1 40 Triticum aestivum TaAffx.121297.1.S1_at BG905238 - - 8e-1 At4g03175 protein kinase family protein C.G. S.X.
0.03 5e-2 40 Vitis vinifera 1614637_at CB975251 hypothetical protein LOC100259598 - 6e-2 At1g03080 - C.G. S.X.
0.01 7e-2 40 Zea mays Zm.17830.1.A1_at CK368104 AP-2 complex subunit mu - 2e-116 At5g46630 clathrin adaptor complexes medium subunit family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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