Gene omics information

Query gene ID At1g02960
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At1g02960839363unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OMPFBS.X.H.G.
0.5570.6At2g32000817760DNA topoisomerase family proteinF:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:endomembrane system, chromosome;BOMAFPVS.X.H.G.
0.5166.3At2g41020818702WW domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
0.5065.3At2g40770818674ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion bindingF:in 6 functions;P:unknown;C:unknown;MFBOPVAS.X.H.G.
0.5065.3At5g14620831315DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.S.X.H.G.
0.4558.3At1g33400840233tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAS.X.H.G.
0.4355.3At4g18600827594WAVE5Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.S.X.H.G.
0.4355.3At1g73970843735unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.4253.9At4g23840828483leucine-rich repeat family proteinF:protein binding;P:unknown;C:cellular_component unknown;BMPOFVAS.X.H.G.
0.4253.9At4g31010829228RNA bindingF:RNA binding;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
106.599.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
83.099.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
60.899.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.699.8GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
52.799.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
50.299.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
47.599.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
46.899.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.399.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.399.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.191e-39165At1g02965839537unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e-242At3g13070820495CBS domain-containing protein / transporter associated domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFAC.G.S.X.
0.021e-242At1g55930842044CBS domain-containing protein / transporter associated domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPAC.G.S.X.
0.012e-138At5g40340834032PWWP domain-containing proteinF:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVAC.G.S.X.
0.012e-138At1g79360844274ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:ion transport;C:integral to membrane, membrane;BMFPOAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxPsAffx.C14000110_atPsAffx.C14000110--1e+0At3g16250NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)C.G.S.X.
0.025e+032Hordeum vulgareContig1648_atContig1648--3e-18At1g66200ATGSR2C.G.S.X.
0.023e-138Oryza sativaOs02g04366009630.m02231--4e-2At1g02960unknown proteinC.G.S.X.
0.021e+036Populus trichocarpaPtp.275.1.S1_atCK097963--1e-4At1g29390COR314-TM2C.G.S.X.
0.023e+034Triticum aestivumTa.7039.1.S1_atBJ314286--3e+0At1g61750-C.G.S.X.
0.028e-134Vitis vinifera1612699_atBQ798614hypothetical protein LOC100249729-1e+0At4g23340oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.015e+032Zea maysZm.8737.1.A1_atBM075427--2e+0At1g62080unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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