Gene omics information

Query gene ID At1g02900
Gene name RALF1 (RAPID ALKALINIZATION FACTOR 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3541.6At1g02900839389RALF1 (RAPID ALKALINIZATION FACTOR 1)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.S.X.H.G.
0.6075.7At4g23690828469disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PS.X.H.G.
0.5974.7At2g36100818183integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5773.8At3g22620821833protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFVS.X.H.G.
0.5673.0At1g08670837389epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.5673.0At2g28670817416disease resistance-responsive family protein / fibroin-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVAS.X.H.G.
0.5673.0At4g17280827442-F:unknown;P:multicellular organismal development;C:membrane;PS.X.H.G.
0.5673.0At5g66390836771peroxidase 72 (PER72) (P72) (PRXR8)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBS.X.H.G.
0.5570.6At2g30210817571LAC3 (laccase 3)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).S.X.H.G.
0.5368.6At4g13580826991disease resistance-responsive family proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
196.7100.0GSM226540L10SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
97.499.9GSM226551Slice9JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
93.699.9GSM226552Slice10JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
87.899.9GSM226541L11SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
64.999.8GSM226553Slice11JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
53.799.8GSM226539L9SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
47.599.8GSM266673Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
41.499.8GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with salt
38.099.8GSM184838Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8GSE7639Expression analysis of root developmental zones after treatment with salt
38.099.8GSM226554Slice12JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.211e-859At3g05490819714RALFL22 (ralf-like 22)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.C.G.S.X.
0.061e-240At4g15800827260RALFL33 (ralf-like 33)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.C.G.S.X.
0.011e-240At1g32180840110ATCSLD6encodes a gene similar to cellulose synthaseC.G.S.X.
0.034e-238At4g21800828268QQT2 (quatre-quart2)Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370).C.G.S.X.
0.022e-136At4g33400829477dem protein-related / defective embryo and meristems protein-relatedF:molecular_function unknown;P:N-terminal protein myristoylation;C:cytosol, nucleus, plasma membrane;FOPMC.G.S.X.
0.022e-136At4g25650828670ACD1-LIKE (ACD1-LIKE)Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.C.G.S.X.
0.102e-136At2g19020816419RALFL10 (ralf-like 10)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-240Glycine maxPsAffx.C925000001_atPsAffx.C925000001--3e-2At3g55790unknown proteinC.G.S.X.
0.043e-134Hordeum vulgareContig11527_atContig11527--1e+0At1g76930ATEXT4 (EXTENSIN 4)C.G.S.X.
0.051e+034Oryza sativaOs04g0499800AK121326.1-Conserved hypothetical protein2e+0At1g62530unknown proteinC.G.S.X.
0.111e+034Populus trichocarpaPtpAffx.162299.1.S1_atCA824756hypothetical protein-1e+0At1g02900RALF1 (RAPID ALKALINIZATION FACTOR 1)C.G.S.X.
0.052e-136Triticum aestivumTaAffx.29365.1.S1_atCA644256--1e-2At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedC.G.S.X.
0.111e-238Vitis vinifera1622465_s_atBQ797465hypothetical protein LOC100263186-3e-14At3g16570RALFL23 (ralf-like 23)C.G.S.X.
0.035e+030Zea maysZm.9206.1.A1_atBM267319hypothetical protein LOC100277714-5e+0At4g29930basic helix-loop-helix (bHLH) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0007267Any process that mediates the transfer of information from one cell to another.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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