CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02900

Gene name RALF1 (RAPID ALKALINIZATION FACTOR 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. S.X. H.G.
0.60 75.7 At4g23690 828469 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P S.X. H.G.
0.59 74.7 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At3g22620 821833 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV S.X. H.G.
0.56 73.0 At1g08670 837389 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.56 73.0 At2g28670 817416 disease resistance-responsive family protein / fibroin-related F:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVA S.X. H.G.
0.56 73.0 At4g17280 827442 - F:unknown;P:multicellular organismal development;C:membrane;P S.X. H.G.
0.56 73.0 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.55 70.6 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.53 68.6 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
196.7 100.0 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
97.4 99.9 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
93.6 99.9 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
87.8 99.9 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
64.9 99.8 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
53.7 99.8 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
47.5 99.8 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
41.4 99.8 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
38.0 99.8 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
38.0 99.8 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 1e-8 59 At3g05490 819714 RALFL22 (ralf-like 22) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. C.G. S.X.
0.06 1e-2 40 At4g15800 827260 RALFL33 (ralf-like 33) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. C.G. S.X.
0.01 1e-2 40 At1g32180 840110 ATCSLD6 encodes a gene similar to cellulose synthase C.G. S.X.
0.03 4e-2 38 At4g21800 828268 QQT2 (quatre-quart2) Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370). C.G. S.X.
0.02 2e-1 36 At4g33400 829477 dem protein-related / defective embryo and meristems protein-related F:molecular_function unknown;P:N-terminal protein myristoylation;C:cytosol, nucleus, plasma membrane;FOPM C.G. S.X.
0.02 2e-1 36 At4g25650 828670 ACD1-LIKE (ACD1-LIKE) Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment. C.G. S.X.
0.10 2e-1 36 At2g19020 816419 RALFL10 (ralf-like 10) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 40 Glycine max PsAffx.C925000001_at PsAffx.C925000001 - - 3e-2 At3g55790 unknown protein C.G. S.X.
0.04 3e-1 34 Hordeum vulgare Contig11527_at Contig11527 - - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) C.G. S.X.
0.05 1e+0 34 Oryza sativa Os04g0499800 AK121326.1 - Conserved hypothetical protein 2e+0 At1g62530 unknown protein C.G. S.X.
0.11 1e+0 34 Populus trichocarpa PtpAffx.162299.1.S1_at CA824756 hypothetical protein - 1e+0 At1g02900 RALF1 (RAPID ALKALINIZATION FACTOR 1) C.G. S.X.
0.05 2e-1 36 Triticum aestivum TaAffx.29365.1.S1_at CA644256 - - 1e-2 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
0.11 1e-2 38 Vitis vinifera 1622465_s_at BQ797465 hypothetical protein LOC100263186 - 3e-14 At3g16570 RALFL23 (ralf-like 23) C.G. S.X.
0.03 5e+0 30 Zea mays Zm.9206.1.A1_at BM267319 hypothetical protein LOC100277714 - 5e+0 At4g29930 basic helix-loop-helix (bHLH) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007267 Any process that mediates the transfer of information from one cell to another.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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