CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02880

Gene name TPK1 (THIAMIN PYROPHOSPHOKINASE1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At1g02880 839303 TPK1 (THIAMIN PYROPHOSPHOKINASE1) Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine. S.X. H.G.
0.57 73.8 At5g09690 830828 magnesium transporter CorA-like family protein (MRS2-7) F:metal ion transmembrane transporter activity;P:metal ion transport;C:membrane;PFOMB S.X. H.G.
0.31 33.8 At3g03120 821079 ATARFB1C (ADP-ribosylation factor B1C) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins. S.X. H.G.
0.22 17.5 At5g64180 836539 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB S.X. H.G.
0.08 2.3 At3g20480 821594 tetraacyldisaccharide 4'-kinase family protein F:tetraacyldisaccharide 4'-kinase activity;P:lipid A biosynthetic process;C:membrane;OBPM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.9 99.8 E-MEXP-509-raw-cel-829148420
52.2 99.8 E-MEXP-509-raw-cel-829148348
52.1 99.8 E-MEXP-509-raw-cel-829148456
51.3 99.8 E-MEXP-509-raw-cel-829148201
47.2 99.8 E-MEXP-509-raw-cel-829148597
42.7 99.8 E-MEXP-509-raw-cel-829148129
42.2 99.8 E-MEXP-509-raw-cel-829148561
40.8 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.4 99.8 E-MEXP-509-raw-cel-829148313
38.1 99.8 E-MEXP-509-raw-cel-829148090
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 0 805 At2g44750 819084 TPK2 (Thiamin pyrophosphokinase 2) Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine. C.G. S.X.
0.02 3e-1 36 At3g01080 821213 WRKY58 member of WRKY Transcription Factor; Group I C.G. S.X.
0.01 3e-1 36 At1g78610 844197 MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6) F:unknown;P:unknown;C:plasma membrane, membrane;BOFAP C.G. S.X.
0.01 1e+0 34 At3g10270 820189 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) Protein targeting to mitochondria is influenced by UTR sequences. C.G. S.X.
0.03 1e+0 34 At2g29440 817493 ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-6 54 Glycine max GmaAffx.53996.2.S1_at BF066536 - - 1e-6 At1g02880 TPK1 (THIAMIN PYROPHOSPHOKINASE1) C.G. S.X.
0.07 4e-2 38 Hordeum vulgare Contig15771_at Contig15771 - - 1e-1 At1g02880 TPK1 (THIAMIN PYROPHOSPHOKINASE1) C.G. S.X.
0.08 2e-4 48 Oryza sativa Os01g0356500 CA760415 - Thiamine pyrophosphokinase family protein 2e+0 At2g44750 TPK2 (Thiamin pyrophosphokinase 2) C.G. S.X.
0.16 3e-5 50 Populus trichocarpa PtpAffx.202336.1.S1_at pmrna4677 hypothetical protein - 4e-5 At1g02880 TPK1 (THIAMIN PYROPHOSPHOKINASE1) C.G. S.X.
0.06 5e+0 32 Triticum aestivum TaAffx.12300.1.A1_at BJ273292 - - 9e-1 At2g31862 - C.G. S.X.
0.19 2e-9 61 Vitis vinifera 1616760_at CF404188 hypothetical protein LOC100246863 - 3e-9 At1g02880 TPK1 (THIAMIN PYROPHOSPHOKINASE1) C.G. S.X.
0.06 5e-1 34 Zea mays Zm.7742.1.A1_at AY107798.1 thiamin pyrophosphokinase 1 - 3e+0 At1g02880 TPK1 (THIAMIN PYROPHOSPHOKINASE1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006772 The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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