CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02860

Gene name NLA (nitrogen limitation adaptation)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g02860 839559 NLA (nitrogen limitation adaptation) Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses. S.X. H.G.
0.44 57.2 At1g44770 841041 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.44 57.2 At1g18470 838427 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVF S.X. H.G.
0.44 57.2 At3g10250 820187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.42 53.9 At5g66930 836827 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.40 50.8 At3g49590 824121 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV S.X. H.G.
0.21 15.8 At3g19190 821453 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.20 14.4 At5g18120 831930 ATAPRL7 (APR-like 7) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. S.X. H.G.
0.18 11.4 At3g48530 824012 KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;BOMAFP S.X. H.G.
0.12 4.9 At5g19050 832024 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;FOBMPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
64.6 99.8 GSM133761 Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
53.1 99.8 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
38.5 99.8 E-MEXP-1443-raw-cel-1581869803
37.5 99.7 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
34.8 99.7 E-MEXP-1443-raw-cel-1581869745
34.7 99.7 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
28.5 99.7 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
27.8 99.7 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
25.2 99.6 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
24.0 99.6 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-4 48 At2g38920 818477 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV C.G. S.X.
0.02 8e-3 42 At3g04130 819568 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.02 3e-2 40 At1g48790 841301 mov34 family protein F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPO C.G. S.X.
0.02 1e-1 38 At4g18550 827587 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMV C.G. S.X.
0.02 1e-1 38 At1g75860 843919 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 9e-22 105 Glycine max GmaAffx.1271.1.S1_at BE821640 - - 5e-22 At1g02860 NLA (nitrogen limitation adaptation) C.G. S.X.
0.04 1e+0 34 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.07 4e-6 54 Oryza sativa Os07g0673200 AK065454.1 - Zn-finger, RING domain containing protein 4e-6 At1g02860 NLA (nitrogen limitation adaptation) C.G. S.X.
0.17 8e-10 65 Populus trichocarpa PtpAffx.211761.1.S1_at pmrna23057 hypothetical protein - 8e-10 At1g02860 NLA (nitrogen limitation adaptation) C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.30843.1.S1_at CN010436 - - 3e-1 At1g02860 NLA (nitrogen limitation adaptation) C.G. S.X.
0.18 7e-16 83 Vitis vinifera 1620101_at CB971892 hypothetical protein LOC100243466 - 3e-15 At1g02860 NLA (nitrogen limitation adaptation) C.G. S.X.
0.02 8e-1 34 Zea mays Zm.2211.1.A1_at BM335820 tat pathway signal sequence family protein - 5e+0 At2g29170 short-chain dehydrogenase/reductase (SDR) family protein / tropinone reductase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009626 The rapid, localized death of plant cells in response to invasion by a pathogen.
X GO:0009697 The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid.
X GO:0009751 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
X GO:0080021 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benzoic acid stimulus.
X GO:0009627 The salicylic acid mediated response to a pathogen which confers broad spectrum resistance.
X GO:0010337 Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving salicylic acid.
X GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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