CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02810

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.85 92.4 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV S.X. H.G.
0.74 86.1 At1g33280 840223 ANAC015 (Arabidopsis NAC domain containing protein 15) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.71 84.2 At4g37160 829870 sks15 (SKU5 Similar 15) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA S.X. H.G.
0.69 82.9 At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family S.X. H.G.
0.67 81.6 At1g10810 837624 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPA S.X. H.G.
0.64 78.9 At3g04320 819587 endopeptidase inhibitor F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.64 78.9 At5g60520 836173 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.60 75.7 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB S.X. H.G.
0.59 74.7 At4g27400 828848 late embryogenesis abundant protein-related / LEA protein-related F:unknown;P:response to salt stress;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
201.4 100.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
160.2 99.9 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
144.8 99.9 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
141.3 99.9 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
139.3 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
131.8 99.9 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
120.1 99.9 GSM184493 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
117.6 99.9 GSM184482 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
116.7 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
115.4 99.9 GSM184486 Epidermis&Cortex root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 1e-107 391 At4g02330 828064 ATPMEPCRB F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM C.G. S.X.
0.20 7e-26 119 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.08 6e-8 59 At3g10720 820241 pectinesterase, putative F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.04 2e-7 57 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.02 2e-5 52 At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.01 9e-4 46 At5g53370 835418 PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F) F:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMO C.G. S.X.
0.03 9e-4 46 At5g04960 830378 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.02 9e-4 46 At1g53830 841820 ATPME2 encodes a pectin methylesterase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 3e-4 48 Glycine max Gma.9501.1.A1_at BI967224 - - 8e-5 At1g02810 pectinesterase family protein C.G. S.X.
0.01 7e+0 32 Hordeum vulgare HVSMEn0019H03r2_at HVSMEn0019H03r2 - - 3e+0 At5g14320 30S ribosomal protein S13, chloroplast (CS13) C.G. S.X.
0.06 1e-10 69 Oryza sativa Os01g0311800 AK107006.1 - Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment) 7e-11 At1g02810 pectinesterase family protein C.G. S.X.
0.16 2e-14 81 Populus trichocarpa Ptp.7635.1.S1_at DN484289 hypothetical protein - 1e-14 At1g02810 pectinesterase family protein C.G. S.X.
0.02 4e-3 44 Triticum aestivum Ta.1564.1.S1_at CD878081 - - 1e-1 At1g11580 PMEPCRA (METHYLESTERASE PCR A) C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1615574_at CB977067 hypothetical protein LOC100245304 - 7e-9 At2g45220 pectinesterase family protein C.G. S.X.
0.02 2e+0 34 Zea mays Zm.12657.1.A1_at CA826570 - - 1e-1 At1g11580 PMEPCRA (METHYLESTERASE PCR A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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