CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02800

Gene name ATCEL2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. S.X. H.G.
0.80 89.8 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At5g44620 834490 CYP706A3 member of CYP706A S.X. H.G.
0.50 65.3 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. S.X. H.G.
0.40 50.8 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
111.1 99.9 GSM131673 ATGE_49_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
109.8 99.9 GSM131674 ATGE_49_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
99.4 99.9 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
98.9 99.9 GSM131675 ATGE_49_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
82.4 99.9 GSM131677 ATGE_50_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
60.8 99.8 GSM131676 ATGE_50_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
57.0 99.8 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
56.3 99.8 GSM131678 ATGE_50_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
51.1 99.8 GSM242963 Steroid day 7 (day7D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
49.8 99.8 E-MEXP-728-raw-cel-1062074608
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 0 811 At4g02290 828080 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.11 1e-8 61 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. C.G. S.X.
0.06 5e-8 59 At4g09740 826560 AtGH9B14 (Arabidopsis thaliana glycosyl hydrolase 9B14) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.11 3e-6 54 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF C.G. S.X.
0.10 1e-5 52 At4g23560 828456 AtGH9B15 (Arabidopsis thaliana glycosyl hydrolase 9B15) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.03 5e-5 50 At2g44540 819062 AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.04 2e-4 48 At2g44550 819063 AtGH9B10 (Arabidopsis thaliana glycosyl hydrolase 9B10) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.07 3e-3 44 At4g39010 830056 AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.04 1e-2 42 At4g11050 826706 AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3) F:carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 8e-14 79 Glycine max Gma.16122.1.S1_at CD413696 - - 4e-14 At1g02800 ATCEL2 C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig2102_at Contig2102 - - 5e+0 At5g30520 unknown protein C.G. S.X.
0.10 4e-4 48 Oryza sativa Os01g0312800 AK106887.1 - Endo-1,4-beta-glucanase precursor (EC 3.2.1.4) 3e-4 At1g02800 ATCEL2 C.G. S.X.
0.34 1e-46 188 Populus trichocarpa PtpAffx.211752.1.S1_x_at pmrna23027 hypothetical protein - 6e-76 At4g02290 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) C.G. S.X.
0.02 5e-2 40 Triticum aestivum Ta.30649.1.A1_at CK207150 hypothetical LOC543015 - 2e-3 At4g39010 AtGH9B18 (Arabidopsis thaliana glycosyl hydrolase 9B18) C.G. S.X.
0.08 6e-5 48 Vitis vinifera 1611330_at AY043236.1 cellulase CEL1-like - 1e-2 At4g02290 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) C.G. S.X.
0.02 8e-2 38 Zea mays Zm.4059.1.A1_at CA828131 endoglucanase 1 - 8e+0 At3g52155 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009624 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
S GO:0007389 Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00435 Cellulose degradation
00438 Xyloglucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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