CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02730

Gene name ATCSLD5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. S.X. H.G.
0.93 96.4 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. S.X. H.G.
0.92 96.0 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.88 94.0 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.88 94.0 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.86 93.1 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP S.X. H.G.
0.83 91.4 At1g76310 843964 CYCB2 core cell cycle genes S.X. H.G.
0.78 88.6 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.9 99.6 GSM131680 ATGE_51_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
23.7 99.6 GSM242958 Mock day 3 (day3E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
23.0 99.6 E-TABM-19-raw-cel-489757414
23.0 99.6 GSM133927 Weigel_2-19_CHIP-209-A_Rep1_ATH1 GSE5746 FRI FLC combos
22.9 99.6 GSM131664 ATGE_46_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.6 99.6 GSM131665 ATGE_46_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.5 99.6 GSM131666 ATGE_46_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.0 99.6 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
21.9 99.6 GSM131674 ATGE_49_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
21.7 99.6 GSM131676 ATGE_50_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 1e-50 202 At3g03050 821148 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide. C.G. S.X.
0.22 1e-29 133 At5g16910 831554 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) encodes a gene similar to cellulose synthase. Located in golgi membranes. C.G. S.X.
0.19 4e-20 101 At2g33100 817872 ATCSLD1 encodes a gene similar to cellulose synthase C.G. S.X.
0.19 2e-18 95 At1g32180 840110 ATCSLD6 encodes a gene similar to cellulose synthase C.G. S.X.
0.06 5e-13 77 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). C.G. S.X.
0.11 1e-10 69 At4g38190 829975 ATCSLD4 encodes a gene similar to cellulose synthase C.G. S.X.
0.04 1e-7 59 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. C.G. S.X.
0.05 2e-6 56 At5g05170 830399 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. C.G. S.X.
0.04 2e-6 56 At3g04181 6240404 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 8e-25 117 Glycine max GmaAffx.85298.1.S1_at BM085417 - - 7e-105 At5g16910 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) C.G. S.X.
0.06 4e-6 54 Hordeum vulgare Contig3478_at Contig3478 - - 1e-115 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) C.G. S.X.
0.19 3e-19 99 Oryza sativa Os06g0111800 AK105393.1 - CSLD2 (Fragment) 3e-64 At3g03050 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) C.G. S.X.
0.56 1e-85 319 Populus trichocarpa PtpAffx.211740.1.S1_at pmrna23009 hypothetical protein - 8e-86 At1g02730 ATCSLD5 C.G. S.X.
0.09 3e-8 61 Triticum aestivum Ta.9118.1.S1_at CK194966 - - 4e-22 At3g03050 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) C.G. S.X.
0.03 9e-9 61 Vitis vinifera 1611671_at CF602815 hypothetical protein LOC100254408 - 2e-127 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
0.06 3e-6 54 Zea mays Zm.519.1.S1_at AI065908 cellulose synthase3 - 2e-113 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048367 The process whose specific outcome is the progression of the shoot over time, from its formation to the mature structure.
C GO:0000271 The chemical reactions and pathways resulting in the formation of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages.
C GO:0009832 The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
N GO:0042546 The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00021 Cellulose biosynthesis
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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