CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02720

Gene name GATL5 (GALACTURONOSYLTRANSFERASE 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g02720 839475 GATL5 (GALACTURONOSYLTRANSFERASE 5) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.51 66.3 At5g38360 833818 catalytic F:catalytic activity;P:biological_process unknown;C:unknown;BOPMFA S.X. H.G.
0.49 63.5 At1g08960 837416 CAX11 member of Potassium-dependent sodium-calcium exchanger like-family S.X. H.G.
0.47 61.2 At1g62050 842501 - F:molecular_function unknown;P:biological_process unknown;C:apoplast;MPOFBV S.X. H.G.
0.47 61.2 At5g55540 835648 TRN1 (TORNADO 1) Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. S.X. H.G.
0.46 59.8 At5g45300 834566 BMY2 (BETA-AMYLASE 2) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOF S.X. H.G.
0.42 53.9 At5g41480 834149 GLA1 (GLOBULAR ARREST1) Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis. S.X. H.G.
0.40 50.8 At5g42780 834288 AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PM S.X. H.G.
0.40 50.8 At1g16020 838172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.39 48.4 At1g63170 842621 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
144.0 99.9 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
143.9 99.9 GSM131691 ATGE_78_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
137.4 99.9 GSM131693 ATGE_78_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
129.2 99.9 GSM131692 ATGE_78_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
86.4 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
51.3 99.8 GSM131688 ATGE_77_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
50.8 99.8 GSM131689 ATGE_77_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
40.8 99.8 GSM131690 ATGE_77_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
28.9 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.1 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 9e-117 420 At4g02130 827438 GATL6 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.45 2e-16 87 At3g62660 825440 GATL7 (Galacturonosyltransferase-like 7) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.13 2e-10 67 At1g13250 837885 GATL3 (Galacturonosyltransferase-like 3) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.07 9e-9 61 At1g24170 839030 LGT9 Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.07 9e-9 61 At1g70090 843345 LGT8 (GLUCOSYL TRANSFERASE FAMILY 8) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 8e-10 65 Glycine max Gma.13839.1.A1_at CD407758 - - 6e-20 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig20492_at Contig20492 - - 6e+0 At1g02720 GATL5 (GALACTURONOSYLTRANSFERASE 5) C.G. S.X.
0.04 5e-6 54 Oryza sativa Os03g0300900 AK119594.1 - Glycosyl transferase, family 8 protein 5e-9 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.19 2e-13 77 Populus trichocarpa PtpAffx.25163.2.A1_at CV230336 glycosyltransferase, CAZy family GT8 - 7e-21 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.03 6e-4 46 Triticum aestivum TaAffx.85163.1.S1_at CA622273 - - 1e-6 At3g62660 GATL7 (Galacturonosyltransferase-like 7) C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1616007_at CB002013 hypothetical protein LOC100264254 - 3e-15 At1g19300 PARVUS (PARVUS) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.397.1.A1_at AI676825 - - 3e+0 At5g63870 PP7 (SERINE/THREONINE PHOSPHATASE 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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