Gene omics information

Query gene ID At1g02580
Gene name MEA (MEDEA)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7989.1At1g02580839422MEA (MEDEA)Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilizationS.X.H.G.
0.6378.1At5g58180835930ATYKT62member of YKT6 Gene FamilyS.X.H.G.
0.6378.1At2g18070816319unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6075.7At5g17200831584glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVAS.X.H.G.
0.5673.0At1g78030844138-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5368.6At5g09340830793ubiquitin, putativeF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVS.X.H.G.
0.5368.6At1g69540843289AGL94 (AGAMOUS-LIKE 94)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators.S.X.H.G.
0.5267.4At5g39930833990CLPS5 (CLP1-SIMILAR PROTEIN 5)Encodes a protein with similarity to the CLP1 polyadenylation factor.S.X.H.G.
0.5267.4At3g58300824999unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.5267.4At2g06020815156myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1039.9100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
268.5100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
223.2100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
192.5100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
164.9100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
159.099.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
147.799.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
134.999.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
131.799.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
114.199.9GSM131106Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1GSE5614Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.095e-1273At4g02020828165SWN (SWINGER)Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG.C.G.S.X.
0.013e-138At5g54930835584AT hook motif-containing proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.013e-138At5g39500833946pattern formation protein, putativeF:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBC.G.S.X.
0.011e+036At5g13760831221unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOFVBAC.G.S.X.
0.011e+036At1g23020838910FRO3Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.C.G.S.X.
0.014e+034At5g20080832130NADH-cytochrome b5 reductase, putativeF:cytochrome-b5 reductase activity, electron carrier activity, oxidoreductase activity;P:response to salt stress;C:mitochondrion, plant-type cell wall;BOFMPAC.G.S.X.
0.004e+034At5g15540831407EMB2773 (EMBRYO DEFECTIVE 2773)Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis.C.G.S.X.
0.014e+034At5g10930830960CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)Encodes CBL-interacting protein kinase 5 (CIPK5).C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.026e+034Glycine maxHgAffx.21680.1.S1_atBI748488--1e+1At5g38480GRF3 (GENERAL REGULATORY FACTOR 3)C.G.S.X.
0.013e-240Hordeum vulgareContig8400_atContig8400--1e-27At4g02020SWN (SWINGER)C.G.S.X.
0.054e-861Oryza sativaOs03g0307800AF407010.1-Enhancer of zeste protein4e-29At4g02020SWN (SWINGER)C.G.S.X.
0.077e-1273Populus trichocarpaPtpAffx.58636.1.S1_atCK096620SET domain protein-2e-44At4g02020SWN (SWINGER)C.G.S.X.
0.014e+034Triticum aestivumTa.19022.1.S1_atCA646055--2e+0At3g22968CPuORF59 (Conserved peptide upstream open reading frame 59)C.G.S.X.
0.011e+034Vitis vinifera1620834_atCB970590hypothetical protein LOC100253371-4e-1At5g02520-C.G.S.X.
0.057e-342Zea maysZm.10341.1.S1_atAF443598.1enhancer of zeste-like protein 3-3e-20At4g02020SWN (SWINGER)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009646A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.
XGO:0016481Any process that stops, prevents or reduces the frequency, rate or extent of transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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