Gene omics information

Query gene ID At1g02420
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At1g02420837779pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBAS.X.H.G.
0.7486.1At3g45120823648transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.7385.5At2g19300816447unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7385.5At3g14670820695unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAS.X.H.G.
0.7184.2At5g35290833483unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownS.X.H.G.
0.6982.9At3g50320824194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6882.2At2g04870815034unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMS.X.H.G.
0.6781.6At1g172753766742transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6378.1At1g44990841064unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane systemS.X.H.G.
0.6176.7At5g27340832792unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1406.4100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
318.5100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
235.5100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
169.1100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
162.799.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
162.699.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
161.999.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
150.499.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
147.999.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
141.799.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-240At5g13770831222pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMABC.G.S.X.
0.035e-240At4g11690826774pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMFBAC.G.S.X.
0.012e-138At5g57660835872zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POC.G.S.X.
0.022e-138At1g31812840069ACBP6 (acyl-CoA-binding protein 6)Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases.C.G.S.X.
0.017e-136At5g55840835678pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.017e-136At5g21222832244protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.017e-136At5g19450832065CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19)calcium-dependent protein kinase (CDPK19) mRNA, completeC.G.S.X.
0.017e-136At5g27310832789-F:molecular_function unknown;P:transcription;C:plasma membrane;OMPBFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e+034Glycine maxHgAffx.3823.1.A1_atCK348867--8e-1At1g02420pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.024e-136Hordeum vulgareContig17612_atContig17612--1e+0At1g01910anion-transporting ATPase, putativeC.G.S.X.
0.026e+034Oryza sativaOsAffx.4394.1.S1_at---0C.G.S.X.
0.281e-1895Populus trichocarpaPtpAffx.207159.1.S1_atpmrna14208hypothetical protein-8e-19At1g02420pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.028e-136Triticum aestivumTa.10362.2.A1_a_atBJ300127--4e+0At4g35295homoserine kinase, putative / HSK, putativeC.G.S.X.
0.029e-134Vitis vinifera1617484_s_atCB003457--9e-1At5g54630zinc finger protein-relatedC.G.S.X.
0.021e+034Zea maysZm.7707.2.A1_atBM334255--5e+0At4g38930ubiquitin fusion degradation UFD1 family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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