CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02420

Gene name pentatricopeptide (PPR) repeat-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At1g02420 837779 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBA S.X. H.G.
0.74 86.1 At3g45120 823648 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.73 85.5 At2g19300 816447 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.73 85.5 At3g14670 820695 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA S.X. H.G.
0.71 84.2 At5g35290 833483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.69 82.9 At3g50320 824194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.68 82.2 At2g04870 815034 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.67 81.6 At1g17275 3766742 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.63 78.1 At1g44990 841064 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system S.X. H.G.
0.61 76.7 At5g27340 832792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1406.4 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
318.5 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
235.5 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
169.1 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
162.7 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
162.6 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
161.9 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
150.4 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
147.9 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
141.7 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-2 40 At5g13770 831222 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMAB C.G. S.X.
0.03 5e-2 40 At4g11690 826774 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:endomembrane system;POMFBA C.G. S.X.
0.01 2e-1 38 At5g57660 835872 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO C.G. S.X.
0.02 2e-1 38 At1g31812 840069 ACBP6 (acyl-CoA-binding protein 6) Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases. C.G. S.X.
0.01 7e-1 36 At5g55840 835678 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.01 7e-1 36 At5g21222 832244 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.01 7e-1 36 At5g19450 832065 CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) calcium-dependent protein kinase (CDPK19) mRNA, complete C.G. S.X.
0.01 7e-1 36 At5g27310 832789 - F:molecular_function unknown;P:transcription;C:plasma membrane;OMPBF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max HgAffx.3823.1.A1_at CK348867 - - 8e-1 At1g02420 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig17612_at Contig17612 - - 1e+0 At1g01910 anion-transporting ATPase, putative C.G. S.X.
0.02 6e+0 34 Oryza sativa OsAffx.4394.1.S1_at - - - 0 C.G. S.X.
0.28 1e-18 95 Populus trichocarpa PtpAffx.207159.1.S1_at pmrna14208 hypothetical protein - 8e-19 At1g02420 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum Ta.10362.2.A1_a_at BJ300127 - - 4e+0 At4g35295 homoserine kinase, putative / HSK, putative C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1617484_s_at CB003457 - - 9e-1 At5g54630 zinc finger protein-related C.G. S.X.
0.02 1e+0 34 Zea mays Zm.7707.2.A1_at BM334255 - - 5e+0 At4g38930 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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