Gene omics information

Query gene ID At1g02400
Gene name GA2OX6 (GIBBERELLIN 2-OXIDASE 6)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At1g02400839508GA2OX6 (GIBBERELLIN 2-OXIDASE 6)Encodes a gibberellin 2-oxidase.S.X.H.G.
0.4457.2At5g49520835012WRKY48member of WRKY Transcription Factor; Group II-cS.X.H.G.
0.2217.5At3g25780822169AOC3 (ALLENE OXIDE CYCLASE 3)Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.S.X.H.G.
0.2014.4At2g22880816819VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.146.8At1g76070843939unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
243.9100.0E-MEXP-1443-raw-cel-1581869863
220.9100.0E-MEXP-1443-raw-cel-1581869921
179.5100.0E-MEXP-1443-raw-cel-1581869688
112.199.9GSM131118AtGen_B-4_1-4-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
111.099.9E-MEXP-1443-raw-cel-1581869632
89.799.9GSM131119AtGen_B-5_1-5-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
77.399.9GSM142851MG001_ATH1_A4-Torres-2N1GSE6176Impact of Type III effectors on plant defense responses
75.899.9GSM204069protoplast_hypoxia_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
72.299.9GSM131146AtGen_B-32_3-4-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
70.899.9GSM131132AtGen_B-18_2-4-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.072e-654At1g78440844180ATGA2OX1 (gibberellin 2-oxidase 1)Encodes a gibberellin 2-oxidase.C.G.S.X.
0.038e-342At1g141308379722-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFMC.G.S.X.
0.038e-342At1g141208379712-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMC.G.S.X.
0.015e-136At5g27120832770SAR DNA-binding protein, putativeSAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 proteinC.G.S.X.
0.022e+034At4g34470829598ASK12 (ARABIDOPSIS SKP1-LIKE 12)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFVC.G.S.X.
0.022e+034At4g34210829569ASK11 (ARABIDOPSIS SKP1-LIKE 11)one of 20 SKP1 homologs in Arabidopsis. Protein is most similar to ASK12 and RNAi lines show defects in stamen development.C.G.S.X.
0.012e+034At1g15530838123receptor lectin kinase, putativeF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVAC.G.S.X.
0.012e+034At1g60160842311potassium transporter family proteinF:potassium ion transmembrane transporter activity;P:potassium ion transport;C:chloroplast;BPOFAVC.G.S.X.
0.012e+034At1g02530839282PGP12 (P-GLYCOPROTEIN 12)F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:integral to membrane;BOMAFPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-136Glycine maxGma.6590.1.S1_atBI969604--3e+0At3g56290unknown proteinC.G.S.X.
0.029e-134Hordeum vulgareContig9794_atContig9794--4e-1At5g61030GR-RBP3 (glycine-rich RNA-binding protein 3)C.G.S.X.
0.066e-550Oryza sativaOs05g0158600AB059416.1-OsGA2ox15e-5At1g02400GA2OX6 (GIBBERELLIN 2-OXIDASE 6)C.G.S.X.
0.105e-1169Populus trichocarpaPtp.4131.1.S1_atAY392094.1gibberellin 2-oxidase-5e-11At1g02400GA2OX6 (GIBBERELLIN 2-OXIDASE 6)C.G.S.X.
0.035e-136Triticum aestivumTaAffx.3079.1.S1_atBE427691--5e-8At1g78440ATGA2OX1 (gibberellin 2-oxidase 1)C.G.S.X.
0.109e-340Vitis vinifera1616423_atBM437002--3e-2At1g02400GA2OX6 (GIBBERELLIN 2-OXIDASE 6)C.G.S.X.
0.023e+032Zea maysZm.14886.1.A1_atBM072766--1e+0At4g16765oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0045487The chemical reactions and pathways resulting in the breakdown of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.
XGO:0009639A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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