Gene omics information

Query gene ID At1g02340
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4761.2At1g02340839300HFR1 (LONG HYPOCOTYL IN FAR-RED)Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.S.X.H.G.
0.6176.7At4g37220829876stress-responsive protein, putativeF:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;PS.X.H.G.
0.4659.8At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMS.X.H.G.
0.4050.8At5g53980835481ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.S.X.H.G.
0.3643.6At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOS.X.H.G.
0.2319.3At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAS.X.H.G.
0.1912.7At5g47450834794AtTIP2Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.099.8GSM131170AtGen_D-2_1-FL_REP1_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.045e-756At3g62090825382PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2)encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.C.G.S.X.
0.027e-342At2g46970819311PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1)encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.C.G.S.X.
0.011e-138At4g19660827710NPR4 (NPR1-like protein 4)Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.C.G.S.X.
0.021e-138At2g414516241352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOC.G.S.X.
0.024e-136At5g10950830962cylicin-relatedF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAC.G.S.X.
0.024e-136At4g31040829231proton extrusion protein-relatedF:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOFC.G.S.X.
0.014e-136At1g05910837101cell division cycle protein 48-related / CDC48-relatedF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BMOFPAVC.G.S.X.
0.012e+034At5g63940836515protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-136Glycine maxGmaAffx.67477.1.S1_atCD406880--7e-5At4g16830nuclear RNA-binding protein (RGGA)C.G.S.X.
0.022e-136Hordeum vulgareContig16695_atContig16695--2e-2At5g20900JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)C.G.S.X.
0.049e-136Oryza sativaOsAffx.18071.1.S1_at---0C.G.S.X.
0.036e-136Populus trichocarpaPtpAffx.8577.1.S1_atDN499916--5e-20At4g08950EXO (EXORDIUM)C.G.S.X.
0.035e-136Triticum aestivumTa.17083.1.S1_atCA617395--1e-2At3g14320zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.035e-134Vitis vinifera1612485_atCF516820--2e+0At1g02340HFR1 (LONG HYPOCOTYL IN FAR-RED)C.G.S.X.
0.043e+032Zea maysZm.18039.1.A1_atCK985952hypothetical protein LOC100191748-1e+0At5g2806040S ribosomal protein S24 (RPS24B)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009642A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus.
SGO:0009585The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
SGO:0009785The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm.
SGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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