CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02110

Gene name proline-rich family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At1g02110 839234 proline-rich family protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBV S.X. H.G.
0.48 62.5 At4g33400 829477 dem protein-related / defective embryo and meristems protein-related F:molecular_function unknown;P:N-terminal protein myristoylation;C:cytosol, nucleus, plasma membrane;FOPM S.X. H.G.
0.44 57.2 At1g11130 837654 SUB (STRUBBELIG) Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3. S.X. H.G.
0.44 57.2 At3g20010 821539 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 6 functions;P:unknown;C:unknown;MBFOPVA S.X. H.G.
0.44 57.2 At3g24495 822040 MSH7 (MUTS HOMOLOG 7) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts. S.X. H.G.
0.39 48.4 At5g67200 836855 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.36 43.6 At5g63920 836513 DNA topoisomerase III alpha, putative F:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;BOMPAFV S.X. H.G.
0.35 41.6 At5g56740 835775 HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of lysine 12 of histone H4 reduces radioactive acetylation by HAG2. HAG2 acetylates histone H4 lysine 12. S.X. H.G.
0.33 38.1 At2g42120 818812 POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:nucleus;OMFAP S.X. H.G.
0.33 38.1 At3g18524 821383 MSH2 (MUTS HOMOLOG 2) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.3 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.8 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.1 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.8 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.0 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.5 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.1 99.7 GSM133765 Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.4 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.2 99.7 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 2e-26 121 At3g60320 825203 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMPFBVA C.G. S.X.
0.02 2e-2 42 At3g23805 821963 RALFL24 (ralf-like 24) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. C.G. S.X.
0.02 7e-2 40 At1g52320 841662 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMOABF C.G. S.X.
0.01 7e-2 40 At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 3e-1 38 At3g10130 820176 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, plastoglobule;OMBPA C.G. S.X.
0.01 3e-1 38 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-10 69 Glycine max GmaAffx.51421.1.S1_at BE059045 bZIP transcription factor bZIP80 - 6e-14 At3g60320 DNA binding C.G. S.X.
0.09 3e-5 50 Hordeum vulgare Contig17860_at Contig17860 - - 4e-5 At1g02110 proline-rich family protein C.G. S.X.
0.03 4e-11 71 Oryza sativa Os10g0562700 AF268596.3 - Protein of unknown function DUF632 domaincontaining protein 2e-11 At1g02110 proline-rich family protein C.G. S.X.
0.05 1e-3 46 Populus trichocarpa PtpAffx.71009.1.A1_at CV235168 hypothetical protein - 1e-7 At3g60320 DNA binding C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.23910.1.S1_s_at CK198852 - - 1e-1 At1g33055 unknown protein C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1617213_at CF415076 hypothetical protein LOC100259443 - 2e-39 At2g01110 APG2 (ALBINO AND PALE GREEN 2) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6743.1.S1_at AF494284.1 empty pericarp 2 - 7e+0 At4g15802 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage