Gene omics information

Query gene ID At1g02110
Gene name proline-rich family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At1g02110839234proline-rich family proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBVS.X.H.G.
0.4862.5At4g33400829477dem protein-related / defective embryo and meristems protein-relatedF:molecular_function unknown;P:N-terminal protein myristoylation;C:cytosol, nucleus, plasma membrane;FOPMS.X.H.G.
0.4457.2At1g11130837654SUB (STRUBBELIG)Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3.S.X.H.G.
0.4457.2At3g20010821539SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 6 functions;P:unknown;C:unknown;MBFOPVAS.X.H.G.
0.4457.2At3g24495822040MSH7 (MUTS HOMOLOG 7)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.S.X.H.G.
0.3948.4At5g67200836855leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
0.3643.6At5g63920836513DNA topoisomerase III alpha, putativeF:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;BOMPAFVS.X.H.G.
0.3541.6At5g56740835775HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2)Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of lysine 12 of histone H4 reduces radioactive acetylation by HAG2. HAG2 acetylates histone H4 lysine 12.S.X.H.G.
0.3338.1At2g42120818812POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:nucleus;OMFAPS.X.H.G.
0.3338.1At3g18524821383MSH2 (MUTS HOMOLOG 2)Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
45.399.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
39.199.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
36.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
33.199.7GSM133765Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.299.7GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.232e-26121At3g60320825203DNA bindingF:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMPFBVAC.G.S.X.
0.022e-242At3g23805821963RALFL24 (ralf-like 24)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.C.G.S.X.
0.027e-240At1g52320841662unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMOABFC.G.S.X.
0.017e-240At1g09730837501Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.013e-138At3g10130820176SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, plastoglobule;OMBPAC.G.S.X.
0.013e-138At1g50060841430pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.141e-1069Glycine maxGmaAffx.51421.1.S1_atBE059045bZIP transcription factor bZIP80-6e-14At3g60320DNA bindingC.G.S.X.
0.093e-550Hordeum vulgareContig17860_atContig17860--4e-5At1g02110proline-rich family proteinC.G.S.X.
0.034e-1171Oryza sativaOs10g0562700AF268596.3-Protein of unknown function DUF632 domaincontaining protein2e-11At1g02110proline-rich family proteinC.G.S.X.
0.051e-346Populus trichocarpaPtpAffx.71009.1.A1_atCV235168hypothetical protein-1e-7At3g60320DNA bindingC.G.S.X.
0.013e-138Triticum aestivumTaAffx.23910.1.S1_s_atCK198852--1e-1At1g33055unknown proteinC.G.S.X.
0.015e+032Vitis vinifera1617213_atCF415076hypothetical protein LOC100259443-2e-39At2g01110APG2 (ALBINO AND PALE GREEN 2)C.G.S.X.
0.012e+034Zea maysZm.6743.1.S1_atAF494284.1empty pericarp 2-7e+0At4g15802-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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