CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g02050

Gene name chalcone and stilbene synthase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF S.X. H.G.
1.00 100.0 At1g69500 843283 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV S.X. H.G.
1.00 100.0 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO S.X. H.G.
0.94 96.7 At1g62940 842596 ACOS5 (ACYL-COA SYNTHETASE 5) encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile. S.X. H.G.
0.94 96.7 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.94 96.7 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
0.94 96.7 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.94 96.7 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.94 96.7 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
0.94 96.7 At4g35420 829695 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
264.6 100.0 GSM131578 ATGE_31_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
245.7 100.0 GSM131577 ATGE_31_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
234.1 100.0 E-MEXP-1592-raw-cel-1617526856
232.3 100.0 GSM131576 ATGE_31_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
202.1 100.0 E-MEXP-1592-raw-cel-1617526984
184.0 100.0 E-MEXP-1592-raw-cel-1617526816
177.8 100.0 E-MEXP-1592-raw-cel-1617526888
169.8 100.0 E-MEXP-1592-raw-cel-1617526912
161.9 99.9 E-MEXP-1592-raw-cel-1617526920
159.1 99.9 E-MEXP-1592-raw-cel-1617526848
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 4e-144 511 At4g00040 828224 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOF C.G. S.X.
0.10 1e-2 42 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF C.G. S.X.
0.01 6e-1 36 At5g20170 832140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPF C.G. S.X.
0.02 6e-1 36 At5g45090 834541 AtPP2-A7 (Phloem protein 2-A7) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.02 6e-1 36 At4g31150 829243 endonuclease V family protein F:endonuclease activity;P:DNA repair;C:cellular_component unknown;BAOMPF C.G. S.X.
0.01 6e-1 36 At2g38185 818397 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:unknown;MOPVF C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-5 50 Glycine max Gma.5579.1.S1_at AW119360 - - 2e-12 At5g13930 TT4 (TRANSPARENT TESTA 4) C.G. S.X.
0.05 3e-1 36 Hordeum vulgare Contig19099_at Contig19099 - - 4e-4 At4g00040 chalcone and stilbene synthase family protein C.G. S.X.
0.08 1e-3 46 Oryza sativa Os10g0484800 D50576.1 - - 8e-4 At1g02050 chalcone and stilbene synthase family protein C.G. S.X.
0.46 2e-11 71 Populus trichocarpa PtpAffx.221055.1.S1_at pmrna37614 chs-like protein - 1e-11 At1g02050 chalcone and stilbene synthase family protein C.G. S.X.
0.09 4e-5 50 Triticum aestivum Ta.2815.3.S1_a_at CA593831 - - 2e-5 At1g02050 chalcone and stilbene synthase family protein C.G. S.X.
0.23 5e-17 87 Vitis vinifera 1610872_at CB969190 hypothetical protein LOC100259793 - 1e-16 At1g02050 chalcone and stilbene synthase family protein C.G. S.X.
0.03 1e-3 44 Zea mays Zm.3804.1.S1_at AW061673 chalcone synthase G - 3e-3 At4g34850 chalcone and stilbene synthase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010584 The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
C GO:0009699 The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00061 Flavonoids biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage