CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01980

Gene name ATSEC1A

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g01980 839296 ATSEC1A member of Reticuline oxidase-like family S.X. H.G.
0.83 91.4 At1g23350 838944 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.83 91.4 At2g28180 817364 ATCHX8 member of Putative Na+/H+ antiporter family S.X. H.G.
0.71 84.2 At2g05850 815137 scpl38 (serine carboxypeptidase-like 38) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.67 81.6 At1g66210 842936 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOMFA S.X. H.G.
0.61 76.7 At5g42490 834256 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA S.X. H.G.
0.40 50.8 At3g02970 821168 EXL6 (EXORDIUM LIKE 6) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
167.9 100.0 E-ATMX-35-raw-cel-1574334880
166.8 100.0 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
165.6 100.0 E-MEXP-285-raw-cel-440782791
162.9 99.9 E-ATMX-35-raw-cel-1574334864
160.8 99.9 E-MEXP-285-raw-cel-440782725
156.6 99.9 E-MEXP-1138-raw-cel-1432772714
155.9 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
153.8 99.9 E-ATMX-35-raw-cel-1574334848
142.8 99.9 E-MEXP-1138-raw-cel-1432772810
142.3 99.9 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 5e-178 624 At1g11770 837722 FAD binding / catalytic/ electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA C.G. S.X.
0.03 2e-10 67 At4g20860 827834 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAM C.G. S.X.
0.08 2e-7 57 At4g20840 827832 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:apoplast, plasma membrane;FBPOAM C.G. S.X.
0.03 2e-7 57 At1g26380 839180 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM C.G. S.X.
0.03 5e-5 50 At1g26400 839182 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM C.G. S.X.
0.08 2e-4 48 At4g20830 827831 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall;FBPOAM C.G. S.X.
0.16 2e-4 48 At1g30740 839954 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM C.G. S.X.
0.03 2e-1 38 At5g44380 834464 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-1 38 Glycine max Gma.17864.1.S1_at BQ299064 - - 1e-8 At4g20840 FAD-binding domain-containing protein C.G. S.X.
0.01 4e-1 36 Hordeum vulgare Contig14132_at Contig14132 - - 2e+0 At5g27860 unknown protein C.G. S.X.
0.04 1e-4 50 Oryza sativa OsAffx.16849.1.S1_at - - - 0 C.G. S.X.
0.04 5e-3 44 Populus trichocarpa PtpAffx.225782.1.S1_at pmrna45373 hypothetical protein - 1e-2 At4g20860 FAD-binding domain-containing protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.57536.1.S1_at CA627341 - - 2e-1 At2g36100 integral membrane family protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1615501_at CF517672 - - 4e+0 At3g11660 NHL1 C.G. S.X.
0.02 1e+0 34 Zea mays Zm.1305.1.S1_at AF034945.1 glycine-rich RNA binding protein - 1e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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