CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01750

Gene name ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB S.X. H.G.
0.88 94.0 At5g04960 830378 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.87 93.5 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA S.X. H.G.
0.86 93.1 At5g61650 836287 CYCP4 The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei. S.X. H.G.
0.85 92.4 At2g03720 814899 MRH6 (morphogenesis of root hair 6) Involved in root hair development S.X. H.G.
0.85 92.4 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.85 92.4 At5g05500 830433 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.85 92.4 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.85 92.4 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.84 91.9 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
248.2 100.0 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
169.8 100.0 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
165.0 100.0 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
164.8 100.0 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
160.3 99.9 GSM184836 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE7639 Expression analysis of root developmental zones after treatment with salt
136.3 99.9 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
132.4 99.9 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
128.3 99.9 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
123.9 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
123.5 99.9 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.88 2e-121 434 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB C.G. S.X.
0.46 5e-39 161 At5g52360 835312 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
0.48 8e-38 157 At4g25590 828664 ADF7 (actin depolymerizing factor 7) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
0.25 6e-14 77 At3g46010 823744 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo. C.G. S.X.
0.16 9e-10 63 At5g59880 836110 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) Encodes actin depolymerizing factor 3 (ADF3). C.G. S.X.
0.09 6e-8 57 At3g46000 823743 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) Encodes depolymerizing factor 2. C.G. S.X.
0.28 3e-6 52 At5g59890 836111 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) actin depolymerizing factor 4 (ADF4) mRNA, complete cds C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 1e-12 73 Glycine max Gma.4270.1.S1_at CF920385 - - 2e-19 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) C.G. S.X.
0.19 7e-12 69 Hordeum vulgare Contig5010_at Contig5010 - - 3e-20 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.31 2e-15 83 Oryza sativa Os04g0555700 AK069329.1 - Actin-depolymerizing factor (ADF) 2e-18 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
0.43 4e-19 95 Populus trichocarpa PtpAffx.200432.1.S1_at pmrna871 hypothetical protein - 3e-19 At1g01750 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) C.G. S.X.
0.18 6e-14 77 Triticum aestivum Ta.5577.2.S1_at CA624616 - - 8e-14 At3g46000 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) C.G. S.X.
0.28 2e-14 77 Vitis vinifera 1618754_at CF203233.1 hypothetical protein LOC100263646 - 5e-31 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.27 2e-18 91 Zea mays Zm.10502.1.S1_at CO521816 actin-depolymerizing factor - 3e-17 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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