Gene omics information

Query gene ID At1g01720
Gene name ATAF1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At1g01720839265ATAF1Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.S.X.H.G.
0.5570.6At5g66650836797unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOAS.X.H.G.
0.5065.3At5g05410830424DREB2AEncodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress–inducible genes.S.X.H.G.
0.4457.2At1g66500842968zinc finger (C2H2-type) family proteinF:zinc ion binding;P:biological_process unknown;C:intracellular;MFOPS.X.H.G.
0.3541.6At1g19210838504AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
141.599.9GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
102.599.9GSM184493Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
92.999.9GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
90.599.9GSM184521Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
86.699.9GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
86.399.9GSM184492Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
78.499.9GSM184518Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
68.999.9GSM184517Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
64.099.8GSM184499Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
60.399.8GSM184527Stele root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.297e-37155At1g77450844081anac032 (Arabidopsis NAC domain containing protein 32)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.289e-24111At5g63790836499ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102)Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.C.G.S.X.
0.268e-1891At5g08790830779ATAF2induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain.C.G.S.X.
0.032e-963At1g34180840317anac016 (Arabidopsis NAC domain containing protein 16)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PC.G.S.X.
0.101e-757At3g15510820790ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.C.G.S.X.
0.095e-756At3g04070819562anac047 (Arabidopsis NAC domain containing protein 47)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.092e-654At3g15500820789ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55)Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.412e-41171Glycine maxGmaAffx.92625.1.S1_s_atCF807343NAC domain protein-8e-42At1g01720ATAF1C.G.S.X.
0.112e-1789Hordeum vulgareContig6233_atContig6233--3e-8At5g08790ATAF2C.G.S.X.
0.218e-29129Oryza sativaOs01g0884300AK068392.1-No apical meristem (NAM) protein domain containingprotein7e-29At1g01720ATAF1C.G.S.X.
0.282e-1377Populus trichocarpaPtp.5104.1.S1_atBP935468NAC domain protein, IPR003441-2e-13At1g01720ATAF1C.G.S.X.
0.075e-446Triticum aestivumTa.5367.1.S1_s_atCK193816NAC domain transcription factor-1e-3At1g01720ATAF1C.G.S.X.
0.368e-34143Vitis vinifera1620621_atCF519062similar to nam-like protein-4e-33At1g01720ATAF1C.G.S.X.
0.123e-652Zea maysZm.4838.1.A1_atAI649483--1e-5At1g01720ATAF1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009788Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid.
XGO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
CGO:0007275The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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