CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01720

Gene name ATAF1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g01720 839265 ATAF1 Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA. S.X. H.G.
0.55 70.6 At5g66650 836797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA S.X. H.G.
0.50 65.3 At5g05410 830424 DREB2A Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress–inducible genes. S.X. H.G.
0.44 57.2 At1g66500 842968 zinc finger (C2H2-type) family protein F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP S.X. H.G.
0.35 41.6 At1g19210 838504 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
141.5 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
102.5 99.9 GSM184493 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
92.9 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
90.5 99.9 GSM184521 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
86.6 99.9 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
86.3 99.9 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
78.4 99.9 GSM184518 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
68.9 99.9 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.0 99.8 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.3 99.8 GSM184527 Stele root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.29 7e-37 155 At1g77450 844081 anac032 (Arabidopsis NAC domain containing protein 32) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.28 9e-24 111 At5g63790 836499 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings. C.G. S.X.
0.26 8e-18 91 At5g08790 830779 ATAF2 induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain. C.G. S.X.
0.03 2e-9 63 At1g34180 840317 anac016 (Arabidopsis NAC domain containing protein 16) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P C.G. S.X.
0.10 1e-7 57 At3g15510 820790 ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2) Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. C.G. S.X.
0.09 5e-7 56 At3g04070 819562 anac047 (Arabidopsis NAC domain containing protein 47) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.09 2e-6 54 At3g15500 820789 ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55) Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-41 171 Glycine max GmaAffx.92625.1.S1_s_at CF807343 NAC domain protein - 8e-42 At1g01720 ATAF1 C.G. S.X.
0.11 2e-17 89 Hordeum vulgare Contig6233_at Contig6233 - - 3e-8 At5g08790 ATAF2 C.G. S.X.
0.21 8e-29 129 Oryza sativa Os01g0884300 AK068392.1 - No apical meristem (NAM) protein domain containingprotein 7e-29 At1g01720 ATAF1 C.G. S.X.
0.28 2e-13 77 Populus trichocarpa Ptp.5104.1.S1_at BP935468 NAC domain protein, IPR003441 - 2e-13 At1g01720 ATAF1 C.G. S.X.
0.07 5e-4 46 Triticum aestivum Ta.5367.1.S1_s_at CK193816 NAC domain transcription factor - 1e-3 At1g01720 ATAF1 C.G. S.X.
0.36 8e-34 143 Vitis vinifera 1620621_at CF519062 similar to nam-like protein - 4e-33 At1g01720 ATAF1 C.G. S.X.
0.12 3e-6 52 Zea mays Zm.4838.1.A1_at AI649483 - - 1e-5 At1g01720 ATAF1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009788 Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid.
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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