Gene omics information

Query gene ID At1g01660
Gene name U-box domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1912.7At1g01660839461U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAVS.X.H.G.
0.4050.8At1g55640842013PRA1.G1 (PRENYLATED RAB ACCEPTOR 1.G1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOFS.X.H.G.
0.2319.3At1g48640841286lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBAS.X.H.G.
0.2014.4At5g43230834341unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBS.X.H.G.
0.168.8At5g36270833624-pseudogene of dehydroascorbate reductaseS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
312.6100.0GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
169.8100.0GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
154.699.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
99.799.9GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
90.899.9GSM226539L9SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
63.299.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
61.199.8GSM226551Slice9JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
55.799.8GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
49.599.8GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
46.799.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.052e-757At1g01670839365U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;OPMFBVAC.G.S.X.
0.024e-654At2g45920819200U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAVC.G.S.X.
0.035e-240At1g01680839251U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;PMOBFVC.G.S.X.
0.022e-138At3g49060824068protein kinase family protein / U-box domain-containing proteinF:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:plasma membrane;MPOBFVAC.G.S.X.
0.002e-138At1g36180840522ACC2 (ACETYL-COA CARBOXYLASE 2)acetyl-CoA carboxylase 2 (ACC2)C.G.S.X.
0.018e-136At4g27420828850ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMFAPVC.G.S.X.
0.018e-136At4g13690827003unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMC.G.S.X.
0.018e-136At3g48560824015CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.C.G.S.X.
0.018e-136At3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.055e-344Glycine maxGma.7517.1.S1_atBU548272--2e-9At2g45910protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.022e+034Hordeum vulgareContig16016_atContig16016--2e+0At1g59710-C.G.S.X.
0.041e-450Oryza sativaOs09g0570000AK058797.1-Protein kinase domain containing protein5e-5At1g01660U-box domain-containing proteinC.G.S.X.
0.103e-448Populus trichocarpaPtpAffx.109942.1.S1_s_atCN550009hypothetical protein-1e-4At1g01660U-box domain-containing proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.117373.1.S1_atBQ605838--1e+0At3g10400RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.023e-136Vitis vinifera1618166_atCD011399--3e+0At5g25210unknown proteinC.G.S.X.
0.022e+034Zea maysZm.3767.2.A1_atBM073671--1e-7At5g20890chaperonin, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0016567The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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