CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01610

Gene name GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At1g01610 839297 GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4) Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8. S.X. H.G.
0.50 65.3 At4g14440 827089 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation S.X. H.G.
0.38 46.7 At4g36250 829782 ALDH3F1 (Aldehyde Dehydrogenase 3F1) Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures. S.X. H.G.
0.36 43.6 At3g55360 824702 CER10 Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport. S.X. H.G.
0.32 35.7 At1g48480 841269 RKL1 Arabidopsis thaliana receptor-like protein kinase (RKL1) gene S.X. H.G.
0.31 33.8 At2g26910 817232 PDR4 (PLEIOTROPIC DRUG RESISTANCE 4) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPV S.X. H.G.
0.27 26.2 At4g25960 828702 PGP2 (P-GLYCOPROTEIN 2) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV S.X. H.G.
0.22 17.5 At5g10480 830912 PAS2 (PASTICCINO 2) Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). S.X. H.G.
0.11 4.1 At5g19290 832049 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:cellular_component unknown;BPOMFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.8 99.8 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
42.3 99.8 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
37.9 99.8 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.0 99.4 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
13.5 99.4 E-MEXP-828-raw-cel-1156922438
12.7 99.3 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
12.0 99.3 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
11.7 99.3 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
11.2 99.2 E-MEXP-546-raw-cel-863289246
11.0 99.2 E-MEXP-849-raw-cel-1181980886
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 965 At4g00400 828140 GPAT8 (glycerol-3-phosphate acyltransferase 8) Involved in cutin assembly. Is functional redundant of GPAT4. C.G. S.X.
0.03 3e-9 63 At2g38110 818389 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) Encodes a protein with glycerol-3-phosphate acyltransferase activity. C.G. S.X.
0.03 3e-3 44 At1g06520 837163 GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1) Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. C.G. S.X.
0.01 2e-1 38 At1g75180 843855 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 8e-1 36 At5g43250 834343 NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
0.01 8e-1 36 At5g44080 834431 bZIP transcription factor family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-28 129 Glycine max GmaAffx.51326.1.S1_at BE330049 - - 1e-36 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig18745_at Contig18745 - - 4e+0 At3g46030 HTB11 C.G. S.X.
0.05 1e-4 50 Oryza sativa Os05g0457800 9633.m03556 - Phospholipid/glycerol acyltransferase familyprotein 1e-11 At3g11430 GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5) C.G. S.X.
0.21 8e-14 79 Populus trichocarpa PtpAffx.27985.1.S1_at CV233330 hypothetical protein - 2e-19 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) C.G. S.X.
0.04 5e-2 40 Triticum aestivum Ta.6416.1.S1_at CK154083 - - 5e-15 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) C.G. S.X.
0.20 4e-9 61 Vitis vinifera 1612479_at CF415448 hypothetical protein LOC100243093 - 1e-8 At1g01610 GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4) C.G. S.X.
0.02 3e-4 46 Zea mays Zm.8822.1.A1_at AY105347.1 glycerol-3-phosphate acyltransferase 8 - 3e-19 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010143 The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants.
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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