Gene omics information

Query gene ID At1g01610
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At1g01610839297GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4)Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8.S.X.H.G.
0.5065.3At4g14440827089HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradationS.X.H.G.
0.3846.7At4g36250829782ALDH3F1 (Aldehyde Dehydrogenase 3F1)Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.S.X.H.G.
0.3643.6At3g55360824702CER10Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport.S.X.H.G.
0.3235.7At1g48480841269RKL1Arabidopsis thaliana receptor-like protein kinase (RKL1) geneS.X.H.G.
0.3133.8At2g26910817232PDR4 (PLEIOTROPIC DRUG RESISTANCE 4)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPVS.X.H.G.
0.2726.2At4g25960828702PGP2 (P-GLYCOPROTEIN 2)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVS.X.H.G.
0.2217.5At5g10480830912PAS2 (PASTICCINO 2)Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).S.X.H.G.
0.114.1At5g19290832049esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:cellular_component unknown;BPOMFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.899.8GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
42.399.8GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
37.999.8GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
15.099.4GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
12.799.3GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
12.099.3GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
11.799.3GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.800965At4g00400828140GPAT8 (glycerol-3-phosphate acyltransferase 8)Involved in cutin assembly. Is functional redundant of GPAT4.C.G.S.X.
0.033e-963At2g38110818389GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)Encodes a protein with glycerol-3-phosphate acyltransferase activity.C.G.S.X.
0.033e-344At1g06520837163GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.C.G.S.X.
0.012e-138At1g75180843855unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.028e-136At5g43250834343NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOC.G.S.X.
0.018e-136At5g44080834431bZIP transcription factor family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFVC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.201e-28129Glycine maxGmaAffx.51326.1.S1_atBE330049--1e-36At4g00400GPAT8 (glycerol-3-phosphate acyltransferase 8)C.G.S.X.
0.031e+034Hordeum vulgareContig18745_atContig18745--4e+0At3g46030HTB11C.G.S.X.
0.051e-450Oryza sativaOs05g04578009633.m03556-Phospholipid/glycerol acyltransferase familyprotein1e-11At3g11430GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5)C.G.S.X.
0.218e-1479Populus trichocarpaPtpAffx.27985.1.S1_atCV233330hypothetical protein-2e-19At4g00400GPAT8 (glycerol-3-phosphate acyltransferase 8)C.G.S.X.
0.045e-240Triticum aestivumTa.6416.1.S1_atCK154083--5e-15At2g38110GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)C.G.S.X.
0.204e-961Vitis vinifera1612479_atCF415448hypothetical protein LOC100243093-1e-8At1g01610GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4)C.G.S.X.
0.023e-446Zea maysZm.8822.1.A1_atAY105347.1glycerol-3-phosphate acyltransferase 8-3e-19At2g38110GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0010143The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants.
CGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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