CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01510

Gene name AN (ANGUSTIFOLIA)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At1g01510 839401 AN (ANGUSTIFOLIA) Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction. S.X. H.G.
0.63 78.1 At2g45700 819178 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA S.X. H.G.
0.63 78.1 At4g39680 830123 SAP domain-containing protein F:DNA binding, nucleic acid binding;P:biological_process unknown;C:cytosol, nucleus, chloroplast;MPOFBVA S.X. H.G.
0.58 73.8 At2g20000 816519 HBT (HOBBIT) Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap. S.X. H.G.
0.55 70.6 At1g18450 838425 ATARP4 Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. S.X. H.G.
0.55 70.6 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. S.X. H.G.
0.53 68.6 At5g51660 835240 CPSF160 F:nucleic acid binding;P:mRNA cleavage, mRNA polyadenylation;C:nucleus;MFPO S.X. H.G.
0.52 67.4 At4g38750 830030 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.52 67.4 At3g04610 819619 FLK (flowering locus KH domain) F:RNA binding, nucleic acid binding;P:positive regulation of flower development;C:nucleus;MOPFVB S.X. H.G.
0.52 67.4 At4g37210 829875 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.9 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.2 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.2 99.5 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.5 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.4 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.4 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.6 99.4 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.7 99.3 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.7 99.3 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.7 99.3 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 40 At1g49650 841389 cell death associated protein-related F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.01 2e-1 38 At5g22310 832291 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV C.G. S.X.
0.02 9e-1 36 Atmg00450 - - hypothetical protein C.G. S.X.
0.01 9e-1 36 At5g24050 832470 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.01 9e-1 36 At5g50270 835092 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 9e-1 36 At2g31770 817734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV C.G. S.X.
0.01 4e+0 34 Atcg01130 - - hypothetical protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 5e-34 147 Glycine max GmaAffx.63439.1.S1_at BQ628576 - - 3e-34 At1g01510 AN (ANGUSTIFOLIA) C.G. S.X.
0.03 8e-6 52 Hordeum vulgare Contig15294_at Contig15294 - - 8e-6 At1g01510 AN (ANGUSTIFOLIA) C.G. S.X.
0.18 8e-46 186 Oryza sativa Os03g0126100 AK111921.1 - C-terminal binding protein 3e-46 At1g01510 AN (ANGUSTIFOLIA) C.G. S.X.
0.13 4e-7 57 Populus trichocarpa PtpAffx.92673.1.S1_at CK092094 hypothetical protein - 1e-7 At1g01510 AN (ANGUSTIFOLIA) C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.4830.3.S1_x_at CA701400 - - 7e-2 At1g35170 - C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1619223_s_at CB005867 hypothetical protein LOC100249279 - 3e-41 At3g43190 SUS4 C.G. S.X.
0.01 6e+0 32 Zea mays ZmAffx.283.1.A1_at AI670414 - - 3e+0 At3g23175 lesion inducing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0000226 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
X GO:0009965 The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.
X GO:0042814 Polarized growth from one end of a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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