CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01430

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.47 61.2 At1g01430 837247 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.67 81.6 At4g00400 828140 GPAT8 (glycerol-3-phosphate acyltransferase 8) Involved in cutin assembly. Is functional redundant of GPAT4. S.X. H.G.
0.61 76.7 At1g61900 842486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P S.X. H.G.
0.43 55.3 At2g26250 817165 KCS10 (3-KETOACYL-COA SYNTHASE 10) epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle. S.X. H.G.
0.22 17.5 At1g66150 842930 TMK1 (TRANSMEMBRANE KINASE 1) receptor-like transmembrane kinase I (TMK1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.4 99.4 E-MEXP-715-raw-cel-1121836301
13.4 99.4 GSM131170 AtGen_D-2_1-FL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
13.2 99.4 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
11.9 99.3 GSM142777 AM002_ATH1_A2-MCCOR-WDA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
11.4 99.3 GSM131176 AtGen_D-8_1-WL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
11.3 99.3 GSM131173 AtGen_D-5_1-BL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
10.4 99.2 E-MEXP-715-raw-cel-1121836153
10.2 99.2 E-MEXP-715-raw-cel-1121836030
9.5 99.1 GSM258794 pvip1 pvip2 seedling biological replicate 3 GSE10248 Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
9.5 99.1 E-MEXP-715-raw-cel-1121836061
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.35 7e-41 169 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.06 5e-8 59 At4g11090 826710 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.06 2e-4 48 At4g23790 828479 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PF C.G. S.X.
0.02 4e-2 40 At4g38910 830046 BPC5 (BASIC PENTACYSTEINE 5) The current TAIR8 structure of this gene is incorrect. The corrected structure, which will be visible in TAIR9, indicates that this gene could possibly be a pseudogene. C.G. S.X.
0.01 4e-2 40 At1g70230 843359 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e-1 38 At5g25350 832607 EBF2 (EIN3-BINDING F BOX PROTEIN 2) Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. C.G. S.X.
0.01 2e-1 38 At3g20280 821572 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;MOBFVPA C.G. S.X.
0.01 2e-1 38 At1g04730 839431 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMFBAPV C.G. S.X.
0.02 7e-1 36 At1g61250 842418 SC3 (SECRETORY CARRIER 3) Encodes a putative secretory carrier membrane protein (SC3). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-10 67 Glycine max GmaAffx.26271.1.S1_at BE329941 - - 8e-11 At1g01430 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig8787_s_at Contig8787 - - 3e+0 At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.03 6e-3 44 Oryza sativa Os.37531.1.S1_at - - - 0 C.G. S.X.
0.04 1e-6 56 Populus trichocarpa PtpAffx.55513.1.S1_at CX185736 hypothetical protein - 2e-6 At4g01080 unknown protein C.G. S.X.
0.03 7e-1 36 Triticum aestivum TaAffx.62609.1.S1_x_at BQ609718 - - 1e+0 At2g43030 ribosomal protein L3 family protein C.G. S.X.
0.03 8e-1 34 Vitis vinifera 1620821_at CD008586 hypothetical protein LOC100242952 - 9e-14 At5g15900 unknown protein C.G. S.X.
0.03 5e-3 42 Zea mays Zm.4056.1.A1_at CA403994 hypothetical protein LOC100192464 - 3e+0 At4g01080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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