CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01410

Gene name APUM22 (Arabidopsis Pumilio 22)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g01410 837547 APUM22 (Arabidopsis Pumilio 22) F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;POFM S.X. H.G.
0.77 88.0 At2g23100 816842 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVA S.X. H.G.
0.73 85.5 At5g45120 834548 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO S.X. H.G.
0.61 76.7 At2g05640 3768197 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.46 59.8 At1g66170 842932 MMD1 (MALE MEIOCYTE DEATH 1) encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. S.X. H.G.
0.46 59.8 At5g60320 836154 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.26 24.4 At1g74480 843789 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFM S.X. H.G.
0.23 19.3 At5g08490 830748 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
291.5 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
273.4 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
270.2 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
266.0 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
260.2 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
253.2 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
252.0 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
250.9 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
247.0 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
237.8 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 3e-2 40 At5g64490 836570 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At2g29800 817530 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPVOBA C.G. S.X.
0.02 2e+0 34 At5g58800 835997 quinone reductase family protein F:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMV C.G. S.X.
0.02 2e+0 34 At5g20520 832174 WAV2 (WAVY GROWTH 2) Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch). C.G. S.X.
0.01 2e+0 34 At5g53520 835434 ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8) oligopeptide transporter C.G. S.X.
0.01 2e+0 34 At5g11880 831061 diaminopimelate decarboxylase, putative / DAP carboxylase, putative F:diaminopimelate decarboxylase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;BOMPFAV C.G. S.X.
0.01 2e+0 34 At4g02670 828206 AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max PsAffx.psHB041xJ12f_at PsAffx.psHB041xJ12f - - 2e+1 At5g02020 unknown protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig361_s_at Contig361 - - 9e-8 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.02 4e+0 34 Oryza sativa Os01g0827700 CR278372 - Lipolytic enzyme, G-D-S-L family protein 2e+0 At5g66400 RAB18 (RESPONSIVE TO ABA 18) C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.3213.1.S1_at DN499920 hypothetical protein - 4e+0 At5g06265 hyaluronan mediated motility receptor-related C.G. S.X.
0.03 9e+0 32 Triticum aestivum TaAffx.80905.1.S1_at CA691314 - - 3e+0 At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1618626_at CB340938 hypothetical protein LOC100250866 - 1e+0 At2g31430 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 2e-1 36 Zea mays ZmAffx.465.1.A1_at AI677343 DTW domain containing protein - 8e-1 At1g02450 NIMIN1 (NIM1-INTERACTING 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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